PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS73782.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family MYB_related
Protein Properties Length: 290aa    MW: 31418.9 Da    PI: 10.2529
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS73782.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.31.5e-12555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +v ++G+g W+tI +  +       R+  ++k++w++
       EPS73782.1  5 KQKWTPEEEAALKAGVVKHGPGKWRTILKDPQfsgvlYLRSNVDLKDKWRN 55
                     79***********************************88***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.982158IPR017930Myb domain
SuperFamilySSF466891.0E-15269IPR009057Homeodomain-like
SMARTSM007172.4E-7459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-14456IPR009057Homeodomain-like
PfamPF002492.8E-9555IPR001005SANT/Myb domain
CDDcd116603.55E-18656No hitNo description
SuperFamilySSF467851.2E-15118196IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005261.8E-9119184IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.102.6E-14120190IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150422.269121189IPR005818Linker histone H1/H5, domain H15
PfamPF005384.5E-8126182IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043047Molecular Functionsingle-stranded telomeric DNA binding
GO:0070491Molecular Functionrepressing transcription factor binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGAPKQKWTP EEEAALKAGV VKHGPGKWRT ILKDPQFSGV LYLRSNVDLK DKWRNMSVMA  60
NGWGSRERAR LALKRMRPTP KHGEGSAAAS ALSQSDDDMA DARTPHASSG GSPPADAPKR  120
SIMRLENLII EAINNLREPG GSNKASVAAY IEDQYWAPPN FKRILSAKLK HLALSGKLVK  180
VKRKYKIAER RNLPEGGKKR ISPRIALDGE GYLTKSQVDL ELEKMMSMTA EEAAAAAAQA  240
VAEAEAAIAE AEEAAREAEA AEAEADAAQA FAEAALKALK SRNNPRMVSK
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00607ChIP-seqTransfer from AT1G49950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088080.11e-132telomere repeat-binding factor 1 isoform X1
RefseqXP_020552115.11e-132telomere repeat-binding factor 1 isoform X1
SwissprotQ8VWK44e-92TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLS8EM770.0S8EM77_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.B00451.1.p1e-124(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28642448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.33e-86telomere repeat binding factor 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  3. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  4. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  5. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  6. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]