PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS73275.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | CO-like | ||||||||
Protein Properties | Length: 297aa MW: 32441.3 Da PI: 5.4781 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.7 | 2.1e-07 | 11 | 43 | 4 | 36 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 + C+ ++ +++ fC+ ++ ++C C +H EPS73275.1 11 KLCDSCKAAPATVFCRADSAFICVPCDGRIHAA 43 68*************************999954 PP | |||||||
2 | zf-B_box | 26.7 | 1.2e-08 | 53 | 97 | 3 | 41 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 ++C+ +e+ +++ C+ + lC++C +H+ H++ p EPS73275.1 53 VWVCEVCEQAPASVTCKADAAALCASCDRDIHSAnplarrHDRHP 97 689*****************************6688888855544 PP | |||||||
3 | CCT | 70.9 | 3.2e-24 | 248 | 292 | 1 | 45 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 Rea++lRYkeKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++e EPS73275.1 248 REARVLRYKEKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRSE 292 9*****************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.1E-13 | 8 | 55 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.125 | 8 | 55 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.9E-5 | 11 | 49 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.38E-9 | 12 | 55 | No hit | No description |
PROSITE profile | PS50119 | 10.338 | 51 | 98 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.2E-6 | 53 | 97 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.17E-8 | 54 | 99 | No hit | No description |
SMART | SM00336 | 2.9E-7 | 56 | 98 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 16.638 | 248 | 290 | IPR010402 | CCT domain |
Pfam | PF06203 | 2.7E-18 | 248 | 290 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010099 | Biological Process | regulation of photomorphogenesis | ||||
GO:0010161 | Biological Process | red light signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MGGQGWSLTA KLCDSCKAAP ATVFCRADSA FICVPCDGRI HAANKLASRH ARVWVCEVCE 60 QAPASVTCKA DAAALCASCD RDIHSANPLA RRHDRHPVVA FYDAASAVKS SAAENFSEEE 120 AEAASWLLPD PNAKAEEDED SGSPEYKSAE YLFTDMDPYL DLDLIAGEEK TEKKEYSTDG 180 VVPGPIVDGY PSYDVEYAAT PKPFMYSFAS SQSMSHSVSL SSSCSMEVGV VPEQGSIPMA 240 TAVSGSDREA RVLRYKEKRK NRKFEKTIRY ASRKAYAETR PRIKGRFAKR SELEVDS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011078988.1 | 1e-142 | zinc finger protein CONSTANS-LIKE 4-like | ||||
Swissprot | Q940T9 | 1e-86 | COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4 | ||||
Swissprot | Q9SK53 | 2e-87 | COL3_ARATH; Zinc finger protein CONSTANS-LIKE 3 | ||||
TrEMBL | S8D1K6 | 0.0 | S8D1K6_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Migut.A00403.1.p | 1e-128 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1035 | 23 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24930.1 | 7e-83 | CONSTANS-like 4 |
Publications ? help Back to Top | |||
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