PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS72622.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

HSF

Protein Properties

Length: 331aa MW: 37251.2 Da PI: 4.8136

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS72622.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	109.9	1.8e-34	17	107	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k+ye+++d+++++++sws + +sfvv+++ efa+ +Lp+yFkhsnf+SF+RQLn+YgFkk++ e+ weF+++ F +g+k+ll++i+ EPS72622.1 17 FLVKTYEMVDDSTTDDIVSWSGSRKSFVVWNPPEFARLLLPSYFKHSNFSSFIRQLNTYGFKKIDPER---------WEFANEDFVQGQKHLLKHIH 104 9******************999*************************************999.........****************** PP XXX CS HSF_DNA-bind 99 rkk 101 r+k EPS72622.1 105 RRK 107 *98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	3.7E-60	13	106	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	5.9E-36	13	106	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	3.2E-37	13	106	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	2.8E-18	17	40	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	2.9E-30	17	106	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.8E-18	55	67	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	56	80	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.8E-18	68	80	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
DGGVVGGSGS GGGPAPFLVK TYEMVDDSTT DDIVSWSGSR KSFVVWNPPE FARLLLPSYF 60 KHSNFSSFIR QLNTYGFKKI DPERWEFANE DFVQGQKHLL KHIHRRKPIH SHSAVSSVVD 120 PERVAFHEEI DKLSKQKTVL QGNLARYKES QSTARLQLET LNQRISFMEQ KQEHLLSFLE 180 KAVQNPGFVE QLTQKLESME FLVYNKKRRI PQADDPPQQD LCNTLTLELS DSGSDINNNE 240 DGRAAPSDSG ASFNLHSVES QESDEEEEDD RVSCLLNLTL ASSSVEPTKT HNPMESSSPP 300 PPPPPLRVND VFWEQFLTER PGGSDNEEAY S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	4e-20	6	106	19	129	Heat shock factor protein 1
5d5v_B	4e-20	6	106	19	129	Heat shock factor protein 1
5d5v_D	4e-20	6	106	19	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011073785.1	1e-127	heat stress transcription factor A-5
Refseq	XP_012842978.1	1e-128	PREDICTED: heat stress transcription factor A-5
Swissprot	Q94BZ5	1e-100	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	S8EJ30	0.0	S8EJ30_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.N00424.1.p	1e-127	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9461	21	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	2e-93	HSF family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]