PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS71528.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | NF-YB | ||||||||
Protein Properties | Length: 222aa MW: 25355.1 Da PI: 5.6347 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 178.2 | 7.8e-56 | 52 | 147 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 +eqdrflPianv+rimkkv+P+n+kiskdaketvqecvsefisfvt+easdkcqrekrktingdd+lwa+ tlGfedyv+plk+yl+kyr+legek EPS71528.1 52 KEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDILWAIMTLGFEDYVNPLKIYLTKYRDLEGEK 147 89*******************************************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 6.3E-53 | 48 | 172 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 3.88E-40 | 54 | 165 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.4E-28 | 57 | 121 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 2.3E-19 | 85 | 103 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 88 | 104 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 2.3E-19 | 104 | 122 | No hit | No description |
PRINTS | PR00615 | 2.3E-19 | 123 | 141 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MKRKREDNTT SSTNEEEEDQ QIPFAETPSP IDANDNNNNS NGGGRATNSS SKEQDRFLPI 60 ANVGRIMKKV IPGNGKISKD AKETVQECVS EFISFVTGEA SDKCQREKRK TINGDDILWA 120 IMTLGFEDYV NPLKIYLTKY RDLEGEKLNL PKQHQQQQQQ QQRMMMLQQH DQNSLGMAGV 180 YSSQPSFLVN DHQQQFPPIR FSQNSTFQLS LLPHQDHVDD HL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 8e-45 | 52 | 142 | 2 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 8e-45 | 52 | 142 | 2 | 92 | Transcription factor HapC (Eurofung) |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099714.1 | 1e-80 | nuclear transcription factor Y subunit B-7 | ||||
Swissprot | Q9SIT9 | 8e-67 | NFYB7_ARATH; Nuclear transcription factor Y subunit B-7 | ||||
TrEMBL | S8E6Q3 | 1e-165 | S8E6Q3_9LAMI; Uncharacterized protein | ||||
STRING | cassava4.1_024313m | 1e-69 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA111 | 24 | 356 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G13570.1 | 5e-65 | nuclear factor Y, subunit B7 |
Publications ? help Back to Top | |||
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