PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS68815.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family ARF
Protein Properties Length: 428aa    MW: 48240 Da    PI: 7.8694
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS68815.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.91.9e-23143243198
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+lt sd++++g +++ +++a+e+       +  ++ s++l+ +d++g +W +++i+r++++r++lt+GW+ Fv+a++L +gD ++F   +r++ el
  EPS68815.1 143 FCKTLTASDTSTHGGFSVLRRHADEClppldmvQ--QPPSQDLVAYDLHGSEWHFRHIFRGQPRRHLLTTGWSVFVSAKKLVAGDAFIFL--RRENNEL 237
                 99****************************9643..455679************************************************..6699999 PP

                 EEEEE- CS
          B3  93 vvkvfr 98 
                 +v+v+r
  EPS68815.1 238 RVGVRR 243
                 ****98 PP
2Auxin_resp110.71.5e-36269351183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha++t++ F+v+Y+Pr+s+seFv++v+k+++a ++k+svGmRfkm+fe e+++err+ Gt+vg+++  + rWp+S+WrsLk
  EPS68815.1 269 ASHAITTGTLFSVFYKPRSSQSEFVISVNKYLDAQNHKLSVGMRFKMRFEAEEAPERRFGGTIVGIEKGASPRWPDSEWRSLK 351
                 789*****************************************************************9999*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.23E-41134272IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.7E-40140258IPR015300DNA-binding pseudobarrel domain
CDDcd100173.75E-22141243No hitNo description
PfamPF023628.1E-21143243IPR003340B3 DNA binding domain
PROSITE profilePS5086311.505143245IPR003340B3 DNA binding domain
SMARTSM010191.1E-20143245IPR003340B3 DNA binding domain
PfamPF065073.9E-34269351IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MALIPTSSLC GGRQTGPAND ALYRELWHAC AGPLVSVPHE GERVYYFPQG HMEQLEASMH  60
QALDQQLPSF DLPSKILCKV MHVQLRAEPE TDEVYAQITL LPEADGCPEY LSLDNIGFGK  120
TQSEIRSPDP PLPEPQSCIV HSFCKTLTAS DTSTHGGFSV LRRHADECLP PLDMVQQPPS  180
QDLVAYDLHG SEWHFRHIFR GQPRRHLLTT GWSVFVSAKK LVAGDAFIFL RRENNELRVG  240
VRRLMRQLNN MPSSVISSHN MHVGVLATAS HAITTGTLFS VFYKPRSSQS EFVISVNKYL  300
DAQNHKLSVG MRFKMRFEAE EAPERRFGGT IVGIEKGASP RWPDSEWRSL KVQWDEPSST  360
IRPDKISPWE LEAVNAATPS TSQAQQRAKR TRPAVLCSPI QELPSPGFPF FLRLVLVHRR  420
YELLHRSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.043801361Auxin response factor 1
4ldw_A0.043801361Auxin response factor 1
4ldw_B0.043801361Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028094255.10.0auxin response factor 1-like isoform X2
SwissprotQ8L7G00.0ARFA_ARATH; Auxin response factor 1
TrEMBLS8CPY40.0S8CPY4_9LAMI; Auxin response factor
STRINGSolyc01g103050.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58381923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Montesinos JC,Pastor-Cantizano N,Robinson DG,Marcote MJ,Aniento F
    Arabidopsis p24δ5 and p24δ9 facilitate Coat Protein I-dependent transport of the K/HDEL receptor ERD2 from the Golgi to the endoplasmic reticulum.
    Plant J., 2014. 80(6): p. 1014-30
    [PMID:25312353]
  3. Marais C, et al.
    The Qb-SNARE Memb11 interacts specifically with Arf1 in the Golgi apparatus of Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(21): p. 6665-78
    [PMID:26208648]
  4. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  5. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]