PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS68316.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | B3 | ||||||||
Protein Properties | Length: 164aa MW: 17858.7 Da PI: 9.0581 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.8 | 4e-18 | 9 | 108 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k l+ sd+++ grlvlpkk+ae++ + ++e++ l + d++g+ W +++++ +++s++yvl+ G ++ +L++gD+v+F++ + ++++lv++ EPS68316.1 9 FEKMLSASDAGRIGRLVLPKKCAEAYfpPIAHPEGFPLNVLDTNGKAWVFQFRFwpNNNSRMYVLE-GITPCIQSLQLQAGDIVIFSRLE-QKGTLVMG 105 89**************************666678899***************9989999999***9.********************765.67777777 PP EE- CS B3 96 vfr 98 ++ EPS68316.1 106 GRK 108 665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.54E-20 | 6 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-28 | 6 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.02E-22 | 7 | 108 | No hit | No description |
SMART | SM01019 | 8.4E-17 | 9 | 110 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.588 | 9 | 110 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.8E-15 | 9 | 107 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
EKAVLTPLFE KMLSASDAGR IGRLVLPKKC AEAYFPPIAH PEGFPLNVLD TNGKAWVFQF 60 RFWPNNNSRM YVLEGITPCI QSLQLQAGDI VIFSRLEQKG TLVMGGRKTP ATQSVEKGVE 120 CTIATTNVLG IGDSCARNSI GVPISFNCQV RGKVVENSPV SHPK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5yzy_C | 2e-54 | 5 | 108 | 19 | 122 | B3 domain-containing transcription repressor VAL1 |
5yzz_C | 2e-54 | 5 | 108 | 19 | 122 | B3 domain-containing transcription repressor VAL1 |
5z00_C | 2e-54 | 5 | 108 | 19 | 122 | B3 domain-containing transcription repressor VAL1 |
5z00_G | 2e-54 | 5 | 108 | 19 | 122 | B3 domain-containing transcription repressor VAL1 |
5z00_K | 2e-54 | 5 | 108 | 19 | 122 | B3 domain-containing transcription repressor VAL1 |
5z00_M | 2e-54 | 5 | 108 | 19 | 122 | B3 domain-containing transcription repressor VAL1 |
6j9a_A | 2e-54 | 5 | 108 | 20 | 123 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011096215.1 | 2e-70 | B3 domain-containing protein Os07g0563300 | ||||
Swissprot | Q0D5G4 | 1e-53 | Y7633_ORYSJ; B3 domain-containing protein Os07g0563300 | ||||
Swissprot | Q6Z3U3 | 1e-53 | Y7797_ORYSJ; B3 domain-containing protein Os07g0679700 | ||||
TrEMBL | S8CTV0 | 1e-118 | S8CTV0_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Migut.M01204.1.p | 1e-62 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1491 | 23 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 5e-55 | HSI2-like 1 |
Publications ? help Back to Top | |||
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