PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS67305.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

Dof

Protein Properties

Length: 262aa MW: 28060.4 Da PI: 9.9752

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS67305.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.6	6.7e-39	35	94	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e a+kcprCds+ntkfCy+nnysl+qPryfCkaCrryWt+GGalrnvPvGgg+r+nk+s+ EPS67305.1 35 EPAQKCPRCDSNNTKFCYFNNYSLTQPRYFCKACRRYWTRGGALRNVPVGGGCRRNKRSK 94 6789*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-31	18	87	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.5E-32	37	92	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.18	38	92	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	40	76	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
PPPPPPQLLP TSHGSSVRTG SMAERARVAN VPMPEPAQKC PRCDSNNTKF CYFNNYSLTQ 60 PRYFCKACRR YWTRGGALRN VPVGGGCRRN KRSKSNGGNG GSNGNSKSAA AAAAQANNDG 120 SSSRSATPSV SPSTALLGIN VSSQLRFISP LPLSDNNFAG DVLGLTAPSV EMDMNNILDT 180 WRLQQFPFLG GLEMPPPPPP TTSPLGIYPF PGGERPKLDN NSGSVKMENL SRQQQQLIGG 240 NEVWNAWNEL PSFSSSSTTN HL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011095199.1	2e-59	dof zinc finger protein DOF5.1
TrEMBL	S8CKR8	0.0	S8CKR8_9LAMI; Uncharacterized protein (Fragment)
STRING	evm.model.supercontig_361.3	1e-53	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1917	24	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	4e-41	Dof family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]