PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS66575.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family ARF
Protein Properties Length: 590aa    MW: 64989.1 Da    PI: 7.0222
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS66575.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.91.1e-24114215199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f k+lt+sd+++ g +++p+ +ae++         ++ +s  ++ +d +grsW++++iyr++++r++lt+GW++Fv+++ L +gD++vF   ++++++l
  EPS66575.1 114 FAKTLTQSDANNGGGFSVPRYCAETIfpkldysADPPVQS--IVAMDIHGRSWKFRHIYRGTPRRHLLTTGWSSFVNSKSLVAGDSIVFV--KTDDGHL 208
                 89****************************9976666675..************************************************..669999* PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +v+++r+
  EPS66575.1 209 RVGIRRS 215
                 ****996 PP
2Auxin_resp97.91.5e-32242323282
  Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsL 82 
                 +  a+ ++ FevvY+P  st+eF+v+++ v++a++v +  GmRfkmafetedss++++  Gtv++v+ +dpv+Wp+S+Wr+L
  EPS66575.1 242 VALAADGEEFEVVYYPCGSTPEFCVRAAVVKAAMEVGWGSGMRFKMAFETEDSSRISWfVGTVASVQVADPVKWPGSPWRLL 323
                 67789999************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-36108217IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-29113219IPR015300DNA-binding pseudobarrel domain
CDDcd100171.51E-22113214No hitNo description
SMARTSM010194.1E-21114216IPR003340B3 DNA binding domain
PfamPF023627.2E-23114215IPR003340B3 DNA binding domain
PROSITE profilePS5086313.831114216IPR003340B3 DNA binding domain
PfamPF065078.2E-28241323IPR010525Auxin response factor
PROSITE profilePS5174514.659507584IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MEESSSSIDP QLWQACAGSM AEIPSLNSAV FYFPQGHCEH ASEAVDFSKI ARVPPPYIPC  60
RVSAVHHMAD HDNDEVFLKM RLMPLDRNPF GFDDSNDDDS SASQPRSSSV AASFAKTLTQ  120
SDANNGGGFS VPRYCAETIF PKLDYSADPP VQSIVAMDIH GRSWKFRHIY RGTPRRHLLT  180
TGWSSFVNSK SLVAGDSIVF VKTDDGHLRV GIRRSKRGGW NPNPNRENGR RRVRAEDVLR  240
AVALAADGEE FEVVYYPCGS TPEFCVRAAV VKAAMEVGWG SGMRFKMAFE TEDSSRISWF  300
VGTVASVQVA DPVKWPGSPW RLLLVNWDEP DLLHNVKRVN PWLVEPVTAS SSAFNMNGFP  360
MSSSSSSSSF SPPFKKLRFT AMAEAQEFSR FGYHHQIMGV ASRSSFVTPA GMQGARHPPR  420
YGVSMAASSY FGQQQQHPLS ISIKPSSADD EPATVTKKTT SAPFLLFGQP ILTDEQITRM  480
GFEDDGTTAV GIDLNRKNRD EPLPVLDGQC KVFLGSEDVG RSLDLPSLGS YDELRRKVGV  540
LLGGEATNLI VYSDSKGAVK QLGDEPFLTF MRSARRLTIL SDTRNCKNND
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A8e-75834551388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094651.10.0auxin response factor 18
RefseqXP_011094652.10.0auxin response factor 18
SwissprotQ653H71e-180ARFR_ORYSJ; Auxin response factor 18
TrEMBLS8CIL40.0S8CIL4_9LAMI; Auxin response factor (Fragment)
STRINGMigut.J00534.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-164auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  3. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]