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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS66320.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | Dof | ||||||||
Protein Properties | Length: 149aa MW: 16708.8 Da PI: 9.5285 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 116.1 | 1.4e-36 | 5 | 62 | 4 | 61 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++l+cprCds ntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++PvGg+ r+ k+ EPS66320.1 5 SKLSCPRCDSINTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGANRRGAKR 62 6789***********************************************9997765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 1.7E-32 | 6 | 60 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 7.0E-25 | 6 | 61 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.211 | 7 | 61 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 9 | 45 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
APLASKLSCP RCDSINTKFC YYNNYNFSQP RHFCKSCRRY WTHGGTLRDI PVGGANRRGA 60 KRSRAAVESD ASVFFPFFQH HDFRRDWEER SFTFPIGGEG RIPVEFSGEG KLLLPPPPHH 120 GGEGIRGLGG VGYTDVAFGI GRNVWPLYG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009101840.1 | 3e-43 | PREDICTED: dof zinc finger protein DOF3.4-like | ||||
Refseq | XP_013646932.1 | 3e-43 | dof zinc finger protein DOF3.4 | ||||
TrEMBL | S8CHJ2 | 1e-106 | S8CHJ2_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Bra030010.1-P | 1e-42 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4532 | 22 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66940.1 | 7e-36 | Dof family protein |
Publications ? help Back to Top | |||
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