PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS63285.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family ARF
Protein Properties Length: 503aa    MW: 56997.8 Da    PI: 8.8963
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS63285.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.85.6e-25115216199
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f+k+ltpsd++++g +++ k++a+e+      + k++ +++l+ +d++g++W++++i+r++++r++l++GW+ Fv++++L +gD ++F   + +++el+
  EPS63285.1 115 FCKTLTPSDTSTHGGFSVLKRHADEClpqldmS-KQPPTQELVAKDLHGNEWRFRHIFRGQPKRHLLQSGWSVFVSSKRLVTGDAFIFL--RGENGELR 210
                 99****************************963.4445569************************************************..449999** PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 v+v+r+
  EPS63285.1 211 VGVRRA 216
                 ***996 PP
2Auxin_resp118.36e-39241323183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha++tk++F+v+Y+Pr+s++eF+v+++++++++k+++svGmRfkm+fe+e+++e+r++Gt+vg++d+d  rWp+SkWr+Lk
  EPS63285.1 241 AWHAIQTKTMFTVYYKPRTSPTEFIVPFDRYMESVKNNYSVGMRFKMKFEGEEAPEQRFTGTIVGLEDSDAKRWPGSKWRCLK 323
                 89*******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.0E-42108230IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-39113244IPR015300DNA-binding pseudobarrel domain
CDDcd100171.49E-21113215No hitNo description
PfamPF023621.0E-22115216IPR003340B3 DNA binding domain
PROSITE profilePS5086311.97115217IPR003340B3 DNA binding domain
SMARTSM010192.3E-22115217IPR003340B3 DNA binding domain
PfamPF065071.6E-36241323IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009737Biological Processresponse to abscisic acid
GO:0009911Biological Processpositive regulation of flower development
GO:0010047Biological Processfruit dehiscence
GO:0010150Biological Processleaf senescence
GO:0010227Biological Processfloral organ abscission
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
KAVDTEAALY TELWKACAGP LVTVPRKQEL VFYFPQGHME QVEASTNQSA DQQMPVYNLP  60
SKILCRVVNV QLKAEVETDE VYAQITLMPE PNQDENEVKR EHPPPPSPRF RVRSFCKTLT  120
PSDTSTHGGF SVLKRHADEC LPQLDMSKQP PTQELVAKDL HGNEWRFRHI FRGQPKRHLL  180
QSGWSVFVSS KRLVTGDAFI FLRGENGELR VGVRRAMRQQ GNAPSSVISS QSMHIGVLAT  240
AWHAIQTKTM FTVYYKPRTS PTEFIVPFDR YMESVKNNYS VGMRFKMKFE GEEAPEQRFT  300
GTIVGLEDSD AKRWPGSKWR CLKVRWDETL SVPRPERVSP WNIEHALTLP TLNPVPVART  360
KRPRPSALPS FSESSVLTRE GSSKMIMDPL PGGTVFPGIV LPEVPESENS EKPSLLWNTL  420
LDDEKVDVST PRRFTSEKWL PMGRQDPSFG NILSGFEPPI NPPRSFGRDH ETKFSFHGNI  480
PSSGLSFSLT DSTSKKNHDH WSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-170834418353Auxin response factor 1
4ldw_A1e-170834418353Auxin response factor 1
4ldw_B1e-170834418353Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1360364KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs) (By similarity). Could act as transcriptional activator or repressor (PubMed:26959229, PubMed:26716451, PubMed:27645097, PubMed:28167023). Involved in the control of fruit ripening process (PubMed:26959229, PubMed:26716451, PubMed:28167023). Regulates expression of a number of ripening regulators, transcription factors, and ethylene biosynthesis and signaling components (PubMed:26959229, PubMed:26716451). May act as a transcriptional repressor of auxin-responsive genes (PubMed:26716451). Regulates vegetative growth, lateral root formation and flower organ senescence, possibly partially by regulating gene expression of auxin and ethylene response factor (ERF) genes (PubMed:28167023). Plays a negative role in axillary shoot meristem formation (PubMed:27645097). {ECO:0000255|RuleBase:RU004561, ECO:0000269|PubMed:26716451, ECO:0000269|PubMed:26959229, ECO:0000269|PubMed:27645097, ECO:0000269|PubMed:28167023}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00574DAPTransfer from AT5G62000Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By tomato fruit ripening. Expression in tomato fruits is up-regulated by exogenous application of ethylene and down-regulated by inhibition of ethylene receptors with 1-methylcyclopropene (1-MCP) (PubMed:26959229, PubMed:26716451). Up-regulated by plant hormone abscisic acid (ABA) in tomato fruits (PubMed:26959229). Expression is not up-regulated by plant hormone auxin in tomato fruits (PubMed:26716451). Up-regulated by auxin and gibberellic acid (GA), and down-regulated by ethylene in seedlings (PubMed:28167023). Down-regulated during decapitation-induced axillary shoot development and by excision of immature leaves. Down-regulation is inhibited by the application of auxin on the cut surface (PubMed:27645097). {ECO:0000269|PubMed:26716451, ECO:0000269|PubMed:26959229, ECO:0000269|PubMed:27645097, ECO:0000269|PubMed:28167023}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012856487.10.0PREDICTED: auxin response factor 2
SwissprotQ2LAJ30.0ARF2A_SOLLC; Auxin response factor 2A
TrEMBLS8C8X00.0S8C8X0_9LAMI; Auxin response factor (Fragment)
STRINGMigut.I00613.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26182444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  3. Breitel DA, et al.
    AUXIN RESPONSE FACTOR 2 Intersects Hormonal Signals in the Regulation of Tomato Fruit Ripening.
    PLoS Genet., 2016. 12(3): p. e1005903
    [PMID:26959229]
  4. Xu T, et al.
    SlARF2a plays a negative role in mediating axillary shoot formation.
    Sci Rep, 2016. 6: p. 33728
    [PMID:27645097]
  5. Ren Z,Liu R,Gu W,Dong X
    The Solanum lycopersicum auxin response factor SlARF2 participates in regulating lateral root formation and flower organ senescence.
    Plant Sci., 2017. 256: p. 103-111
    [PMID:28167023]