PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS63133.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

C2H2

Protein Properties

Length: 296aa MW: 32449 Da PI: 9.0029

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS63133.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16	3.4e-05	68	90	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 C Cgk F+ +++L+ H + H EPS63133.1 68 HCRRCGKIFTKPDDLELHRAVsH 90 5*****************98877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.702	67	95	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	69	90	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	2.11E-21	92	295	No hit	No description
Gene3D	G3DSA:3.90.228.10	6.8E-14	93	294	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MAAQHQRDSS KWTNRLLCSG SLCNNAATAE TVSNGHPPPP SFPAKLSGCY ECRTAAGTGR 60 DHSAVLLHCR RCGKIFTKPD DLELHRAVSH AVTELGPQDT SKHIVEIIFR SSWLDRKQGP 120 VCRIHRILKI HNTSRTIRKF EEYRETIKAR AARKHPRCLA DGNELLRFHC TNVKCSLGLN 180 ASSNLCTSSS SSSIIPSCSV CAVIKHGFRV VSQSSCKGIL TTATSGRAHD KCRGEEGGPR 240 AMLVCRVIAG RVKSHPEENS DDYDSVKGAG CSNLDELYVF NPRAIFPCFV VIYTGL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012855037.1	1e-112	PREDICTED: uncharacterized protein LOC105974477
TrEMBL	S8DJS5	0.0	S8DJS5_9LAMI; Uncharacterized protein
STRING	Migut.C01171.1.p	1e-112	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10723	15	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	4e-70	C2H2-like zinc finger protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]