PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS62442.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | MYB | ||||||||
Protein Properties | Length: 164aa MW: 19036.4 Da PI: 5.7456 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.5 | 2.7e-07 | 1 | 43 | 4 | 45 |
S-HHHHHHHHHH.HHHTTTT.-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvda.vkqlGgg.tWktIartmgkgRtlkqcksrwq 45 WT Ed+l+ + v+ +G + W++Ia+++g ++++ ++ ++ EPS62442.1 1 WTWKEDKLFETYlVEFYGCPdIWEKIAAKLG-TKSPAEIERHFE 43 *********98625556666***********.*********996 PP | |||||||
2 | Myb_DNA-binding | 49.4 | 1.1e-15 | 92 | 137 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++WT+eE+ l++ + +++G+g+Wk+I+r+m ++R + q+ s+ qk+ EPS62442.1 92 KPWTEEEHRLFLLGLEKFGKGDWKSISRYMVQTRNPTQVASHAQKH 137 58******************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.345 | 1 | 50 | IPR017884 | SANT domain |
SMART | SM00717 | 1.4 | 1 | 48 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.55E-7 | 1 | 49 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.6E-5 | 1 | 46 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.06E-6 | 1 | 46 | No hit | No description |
PROSITE profile | PS51294 | 17.143 | 86 | 142 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.62E-17 | 87 | 143 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.8E-11 | 87 | 145 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.9E-15 | 89 | 141 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 3.5E-12 | 90 | 140 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-12 | 92 | 137 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.42E-9 | 93 | 138 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
WTWKEDKLFE TYLVEFYGCP DIWEKIAAKL GTKSPAEIER HFEVLVEDVD AIEAGLIDPP 60 DYEDKDVSNS PEPQKNPKSD KKPVPVQRKA GKPWTEEEHR LFLLGLEKFG KGDWKSISRY 120 MVQTRNPTQV ASHAQKHFER QEKEEANKKR RSIFDCSISE GTSN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011095585.1 | 5e-83 | transcription factor DIVARICATA-like | ||||
TrEMBL | S8DRM7 | 1e-118 | S8DRM7_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Migut.M01627.1.p | 4e-76 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14988 | 6 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 2e-35 | MYB family protein |
Publications ? help Back to Top | |||
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