PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS60213.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

C2H2

Protein Properties

Length: 350aa MW: 37965.1 Da PI: 8.3664

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS60213.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.7	0.0004	111	133	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ Cg+ F+ ++L++H + H EPS60213.1 111 VCSECGEIFPKIESLEHHRAVrH 133 8*****************98877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	110	133	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	4.12E-20	135	348	No hit	No description
Gene3D	G3DSA:3.90.228.10	3.1E-11	139	347	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
TSWDHIKNLL TCKQIAASQI HHPTPTLICS DICSVREAVH TSSRVVHRAD NSPENSTEAK 60 LISKPRPNGG GGGGSGYSHR GMQLRRLSGC YECHAIVDPA RYHVARPTIC VCSECGEIFP 120 KIESLEHHRA VRHAVCELGA DDSSRNIVEI IFKSSWLMKD NPICKIERIL KVQNTQRTIQ 180 RFEDYRDAVK IRATARARKD ARCAADGNEL LRFRGASLAC ALGSRGSTSL CSGGASCGVC 240 TIIRHGFQGS KFAGIRTTAS SGRAHDCVLV GGESEARRAM LVCRVIAGRV QRAAEGGEDE 300 EQQDGGAAEG KNYDSVASVA GVYSNLEELF VFSSRAILPC FVVIYKSMEA

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

TSWDHIKNLL TCKQIAASQI HHPTPTLICS DICSVREAVH TSSRVVHRAD NSPENSTEAK  60
LISKPRPNGG GGGGSGYSHR GMQLRRLSGC YECHAIVDPA RYHVARPTIC VCSECGEIFP  120
KIESLEHHRA VRHAVCELGA DDSSRNIVEI IFKSSWLMKD NPICKIERIL KVQNTQRTIQ  180
RFEDYRDAVK IRATARARKD ARCAADGNEL LRFRGASLAC ALGSRGSTSL CSGGASCGVC  240
TIIRHGFQGS KFAGIRTTAS SGRAHDCVLV GGESEARRAM LVCRVIAGRV QRAAEGGEDE  300
EQQDGGAAEG KNYDSVASVA GVYSNLEELF VFSSRAILPC FVVIYKSMEA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011074673.1	1e-167	uncharacterized protein LOC105159339 isoform X2
TrEMBL	S8DBU6	0.0	S8DBU6_9LAMI; Uncharacterized protein (Fragment)
STRING	XP_009616115.1	1e-155	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5195	23	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-126	C2H2-like zinc finger protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]