PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS60106.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

G2-like

Protein Properties

Length: 187aa MW: 21010.6 Da PI: 8.2197

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS60106.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100	1.6e-31	76	131	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k r++W+p+LH++Fv++++qLGG+++AtPk+i+elm+v+gLt+++vkSHLQkYR++ EPS60106.1 76 KRRRCWSPDLHRKFVSVLQQLGGAQVATPKQIRELMQVDGLTNDEVKSHLQKYRVH 131 689***************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.7E-28	73	134	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.181	73	133	IPR017930	Myb domain
SuperFamily	SSF46689	2.76E-17	74	134	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.6E-25	76	131	IPR006447	Myb domain, plants
Pfam	PF00249	3.2E-7	78	129	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MMPSPAADLF PLHEKLSESR VRYKGGEDKV PLLSLSTVET KDLKEEMINN YSSGLSSTSR 60 SMASSPAADS KLNSKKRRRC WSPDLHRKFV SVLQQLGGAQ VATPKQIREL MQVDGLTNDE 120 VKSHLQKYRV HVRRTDKVSV AKSRGERPCK TSKNGNSPTG SLELARSMTE DYEEEEEEED 180 VSEINNQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012072452.1	2e-35	myb family transcription factor EFM
Refseq	XP_020552167.1	1e-35	myb family transcription factor EFM isoform X2
TrEMBL	S8C6R3	1e-135	S8C6R3_9LAMI; Uncharacterized protein
STRING	Lus10012056	2e-34	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4361	24	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	4e-32	G2-like family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]