PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS59729.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family HB-other
Protein Properties Length: 302aa    MW: 34485.8 Da    PI: 4.8782
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS59729.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.17.1e-092442792055
                 HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
    Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                 +k +yp+++++  LA+++gL+++q+ +WF N+R ++
  EPS59729.1 244 YKWPYPTESDKIFLAESTGLDQKQINNWFINQRKRH 279
                 4679*****************************885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.2E-2165109IPR005540KNOX1
PfamPF037902.3E-1967107IPR005540KNOX1
SMARTSM012569.5E-20117168IPR005541KNOX2
PfamPF037912.4E-21121167IPR005541KNOX2
SMARTSM011880.0093199220IPR005539ELK domain
PROSITE profilePS5007112.681219282IPR001356Homeobox domain
SuperFamilySSF466892.27E-19220294IPR009057Homeodomain-like
SMARTSM003892.9E-12221286IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-27224283IPR009057Homeodomain-like
CDDcd000863.23E-12231283No hitNo description
PfamPF059209.2E-17239278IPR008422Homeobox KN domain
PROSITE patternPS000270257280IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MDGIYGEDDS FTPSDNLIIP AQYTADLPPP YDPMISYAAD FRRRIPSGGC FQPSDHDQED  60
IQVPEMIKAK IASHPSYAKL LHAYVECQKV GAPPEIAWFL DEIRREKENC ASTGEAISIC  120
VGMDPELDDF MESYHEILVK LKIDLTRPFD EATSFLNKIE AQLGNLCKEE SRLTAASSDE  180
DTSVGDQGGE SGRRNQGGGL KESLLRRYGS EINRLKMEFS KKKKKGKLPK ESRETLLQWW  240
NLHYKWPYPT ESDKIFLAES TGLDQKQINN WFINQRKRHW KPSENMQLAM MGNYSTDFLG  300
EE
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071110.11e-110homeobox protein knotted-1-like 6 isoform X1
SwissprotQ84JS65e-96KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLS8BZ700.0S8BZ70_9LAMI; Uncharacterized protein
STRINGVIT_01s0127g00210.t011e-106(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7532480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.13e-88KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]