PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS59196.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family C2H2
Protein Properties Length: 289aa    MW: 31964.7 Da    PI: 8.5547
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS59196.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.21.7e-07145166223
                 EETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                  C++Cgk F+r  nL+ H+r H
  EPS59196.1 145 FCEICGKGFKRDANLRMHMRAH 166
                 6*******************99 PP
2zf-C2H212.20.00054261277521
                 TTTEEESSHHHHHHHHH CS
     zf-C2H2   5 dCgksFsrksnLkrHir 21 
                  Cg+sFsrk+ L  H+ 
  EPS59196.1 261 SCGTSFSRKDKLFGHMA 277
                 5**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.19E-6140167No hitNo description
SMARTSM003550.0015144166IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.967144171IPR007087Zinc finger, C2H2
PfamPF128740.0015145164No hitNo description
Gene3DG3DSA:3.30.160.607.1E-6146168IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280146166IPR007087Zinc finger, C2H2
SMARTSM0035559192225IPR015880Zinc finger, C2H2-like
SMARTSM0035513230252IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.8E-4252277IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355210258282IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
SFYTDMRQTP AATDPPAAAA PVDPRIPLMN LSEVQSRMDS LQKFLSESVN SNTLLGQPLM  60
EMVSAEIASA IQQIIVNGAA LLSSCHSPPS GIESKEEKGG FANPGPADPE KLANPKVEIR  120
AEGEFDDYDV VELDAVELLS EHVHFCEICG KGFKRDANLR MHMRAHGNQF KTPEALAKPV  180
KSGESGGRRI RFSCPYVGCN RNKQHKKFRP LKSVICVKNH FKRSHCPKMY SCTRCNKKSF  240
SVVADLKSHL KHCGESKWKC SCGTSFSRKD KLFGHMALFE GHMPAVVDE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097563.11e-161protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
SwissprotQ943I62e-77STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLS8C4360.0S8C436_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.L00137.1.p1e-145(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA100002126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.39e-79C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]