PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT33404
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB_related
Protein Properties Length: 418aa    MW: 46876.5 Da    PI: 7.3156
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT33404genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.66.6e-094670125
                     TSSS-HHHHHHHHHHHHHTTTT-HH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWk 25
                     +g+WT+eEd++++d+v+++G+  W+
         EMT33404 46 KGPWTQEEDDKIIDLVRKYGPTKWS 70
                     79**********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-42151IPR009057Homeodomain-like
SuperFamilySSF466891.47E-112172IPR009057Homeodomain-like
PROSITE profilePS5129412.0824197IPR017930Myb domain
PfamPF002495.0E-74670IPR001005SANT/Myb domain
CDDcd001671.80E-54871No hitNo description
Gene3DG3DSA:1.10.10.602.3E-95273IPR009057Homeodomain-like
Gene3DG3DSA:3.10.110.101.7E-1474154IPR016135Ubiquitin-conjugating enzyme/RWD-like
SMARTSM002122.0E-890200No hitNo description
PROSITE profilePS5012713.988112185IPR000608Ubiquitin-conjugating enzyme E2
CDDcd001951.29E-25113195No hitNo description
SuperFamilySSF544953.19E-25113201IPR016135Ubiquitin-conjugating enzyme/RWD-like
PfamPF001794.9E-9114155IPR000608Ubiquitin-conjugating enzyme E2
Gene3DG3DSA:3.10.110.103.8E-16155202IPR016135Ubiquitin-conjugating enzyme/RWD-like
SuperFamilySSF516215.9E-11227318IPR015813Pyruvate/Phosphoenolpyruvate kinase-like domain
Gene3DG3DSA:3.20.20.604.7E-12267317IPR015813Pyruvate/Phosphoenolpyruvate kinase-like domain
PfamPF002246.8E-12267319IPR015793Pyruvate kinase, barrel
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006096Biological Processglycolytic process
GO:0000287Molecular Functionmagnesium ion binding
GO:0003677Molecular FunctionDNA binding
GO:0004743Molecular Functionpyruvate kinase activity
GO:0030955Molecular Functionpotassium ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MDRSSTCVVS SHILSASIYA AELFLDRTEV QYLHPWQKVL NPELIKGPWT QEEDDKIIDL  60
VRKYGPTKWS HCKDLQKDPP TSAQILPRIV LRLDERAVGV AWLLTVVTGH GGPVGEDMFQ  120
WQATIMGPSD SPFTSGLFLV NIHFPLYYPF KPQKVLLSIC SLLTDPNPND PLVPEIAHMY  180
KTDWAKYEST ACSWTQKYAM DGCIGKQCRE RSSESSFVNM TAGAADDIYI DMPTLSDEDK  240
DVMKKWGAPN KIDFLSFLYK ACRRCAAMFL FQKSALHKCN MAGKPAAVTR VVDSMTDNLR  300
PTRADATDVE NAVLDTAHYC TQTNYNYTSC NMNHNCFVQA NCQVQAHHAI PRLKTNQSKW  360
SFTSAFEARQ SLIVRGFFPM LADPRHPAES TSTRNESVLN VALDHGKASG VIKSHGLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4x57_A3e-417320042178Ubiquitin-conjugating enzyme E2 8
4x57_C3e-417320042178Ubiquitin-conjugating enzyme E2 8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2518631e-80AK251863.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf135p09, mRNA sequence.
GenBankAK3561851e-80AK356185.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1031C02.
GenBankAK3634641e-80AK363464.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2015L11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLN1R4I90.0N1R4I9_AEGTA; Ubiquitin carrier protein E2 28
STRINGEMT334040.0(Aegilops tauschii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.27e-22myb domain protein 3r-5