PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT33356
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB
Protein Properties Length: 261aa    MW: 27641.7 Da    PI: 8.0175
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT33356genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.43.4e-081445132
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                     rg W++eEde+l + v+ +G g+W+++a+  g
         EMT33356 14 RGLWSPEEDEKLMNHVAPYGYGCWSSVAKIAG 45
                     788*************************9877 PP
2Myb_DNA-binding39.99.5e-134688246
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     g++++ E++l+++++   G++ W+ Ia+ ++ gRt++++k++w++
         EMT33356 46 GPFSQGEEDLIIHLHSIRGNK-WSQIAAQLP-GRTDNEVKNFWNS 88
                     799******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-11842IPR009057Homeodomain-like
SuperFamilySSF466893.25E-191186IPR009057Homeodomain-like
SMARTSM007172.9E-111392IPR001005SANT/Myb domain
PfamPF002491.2E-61445IPR001005SANT/Myb domain
PROSITE profilePS5129419.1894094IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-194691IPR009057Homeodomain-like
PfamPF002491.3E-114688IPR001005SANT/Myb domain
CDDcd001671.00E-84790No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MSKRPGATKK RLKRGLWSPE EDEKLMNHVA PYGYGCWSSV AKIAGGPFSQ GEEDLIIHLH  60
SIRGNKWSQI AAQLPGRTDN EVKNFWNSII KKKLRQRRID PAIHKPLAHA GAAAAATPVS  120
RTAVFSEAEL ILSSPVGTQP MPPLVSAESY VYSRGSMDGA GGVVGGCSDD GSLSSLSGYN  180
NNQTADFAGY LDADALHGGV IPSVWGSSTL NWMAGVSPGG AVNTNATTHE PCCNNNNPSN  240
RGSGFESSTT QSSSNHHLPD Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-1512945108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3537850.0AK353785.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1002L23.
GenBankAK3582100.0AK358210.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1071D01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154053.11e-136transcription factor MYB3-like
TrEMBLN1R4X20.0N1R4X2_AEGTA; Transcription factor MYB86
STRINGEMT333560.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30923385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.12e-43myb domain protein 86