PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT33018
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB
Protein Properties Length: 328aa    MW: 35382.1 Da    PI: 6.7811
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT33018genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.9e-171562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WTteEd+ll d++++ G g+W++ ++  g++R++k+c++rw +yl
         EMT33018 15 KGPWTTEEDKLLMDYIQEKGHGSWRRLPKLAGLNRCGKSCRLRWTNYL 62
                     79********************************************97 PP
2Myb_DNA-binding55.21.6e-1768113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rgr+T +E++l+ +++ +lG++ W++Ia +++ gRt++++k++w+++l
         EMT33018  68 RGRFTDDEEKLIMHLHSLLGNK-WSSIATKLP-GRTDNEIKNYWNTHL 113
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.1891062IPR017930Myb domain
SuperFamilySSF466891.02E-2912109IPR009057Homeodomain-like
SMARTSM007173.9E-131464IPR001005SANT/Myb domain
PfamPF002495.2E-161562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-231669IPR009057Homeodomain-like
CDDcd001671.86E-101762No hitNo description
PROSITE profilePS5129427.36763117IPR017930Myb domain
SMARTSM007172.0E-1567115IPR001005SANT/Myb domain
PfamPF002496.9E-1668113IPR001005SANT/Myb domain
CDDcd001677.51E-1270113No hitNo description
Gene3DG3DSA:1.10.10.603.4E-2670117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MGRSPCCDGE AGVKKGPWTT EEDKLLMDYI QEKGHGSWRR LPKLAGLNRC GKSCRLRWTN  60
YLRPDIKRGR FTDDEEKLIM HLHSLLGNKW SSIATKLPGR TDNEIKNYWN THLRKKLLRM  120
GIDPVTHRPR TDLSMLAGLP GLLAAAGNFG GSGAGTAAWD MNALKLQVDV AKFQLLQGLV  180
RALTTAAAPA PAPGMDYLME LLAVSNGGQH GGVDQNILLQ QCQWNHMNNL PALTSSAPTS  240
GMHNISGLFD GFSAGDGLSS TELGGHGGAS WSKVTVDPLM ADDIECKNNG GGSVSCEQTP  300
ASSPFDGLES LNLMDDLNTD GGWKDLLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-28151174105MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-28151174105C-Myb DNA-Binding Domain
1msf_C1e-28151174105C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276651e-121KJ727665.1 Zea mays clone pUT5592 MYB transcription factor (MYB148) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020162283.10.0transcription factor MYB39-like
SwissprotQ8GWP07e-79MYB39_ARATH; Transcription factor MYB39
TrEMBLA0A453QDJ10.0A0A453QDJ1_AEGTS; Uncharacterized protein
TrEMBLM8CFL70.0M8CFL7_AEGTA; Transcription factor MYB39
STRINGEMT330180.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.28e-79myb domain protein 9