PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

EMT31776

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

WRKY

Protein Properties

Length: 391aa MW: 42215.8 Da PI: 8.6142

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT31776	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.1	1.6e-32	249	307	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s fprsYYrCt a+C vkk vers++dp++v++tYeg+H h+ EMT31776 249 LDDGYRWRKYGQKAVKNSSFPRSYYRCTAAQCGVKKLVERSQQDPSTVVTTYEGRHAHP 307 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.3E-32	236	309	IPR003657	WRKY domain
SuperFamily	SSF118290	6.02E-28	242	309	IPR003657	WRKY domain
PROSITE profile	PS50811	30.343	244	309	IPR003657	WRKY domain
SMART	SM00774	5.2E-37	249	308	IPR003657	WRKY domain
Pfam	PF03106	1.6E-25	250	307	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MSGSAAASGG DLGGGQIYGD HVFFQSQSAC GGGDGGGVIP STYSSITDYL HGLLDPAELA 60 KHLDVPPCYP TMRDAIGAVA TPVTPNSSTS GEAAGAESHG GKRGRPSPEE GDEDRSAGQR 120 RRGGSQAPGR TSVLPDDERR DRRGSDSGHA QLVEVIEKLG YHGYHEIPRR FRTIYESEQI 180 SSKIVSNSKF QNFFAWEVDF SWGTGKCGYQ AVSELSGRSE KKKTKEGKRE KKPRGSRVAF 240 ATKSEVDHLD DGYRWRKYGQ KAVKNSSFPR SYYRCTAAQC GVKKLVERSQ QDPSTVVTTY 300 EGRHAHPSPV AAHCGSRMLM GTGVHTVYSL DVLQHQHRGF FPAGTDVYGR MCAPPSTAAS 360 VVAHRSSEYG GMQAQAGLLP DAVMSYEHVH P

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MSGSAAASGG DLGGGQIYGD HVFFQSQSAC GGGDGGGVIP STYSSITDYL HGLLDPAELA  60
KHLDVPPCYP TMRDAIGAVA TPVTPNSSTS GEAAGAESHG GKRGRPSPEE GDEDRSAGQR  120
RRGGSQAPGR TSVLPDDERR DRRGSDSGHA QLVEVIEKLG YHGYHEIPRR FRTIYESEQI  180
SSKIVSNSKF QNFFAWEVDF SWGTGKCGYQ AVSELSGRSE KKKTKEGKRE KKPRGSRVAF  240
ATKSEVDHLD DGYRWRKYGQ KAVKNSSFPR SYYRCTAAQC GVKKLVERSQ QDPSTVVTTY  300
EGRHAHPSPV AAHCGSRMLM GTGVHTVYSL DVLQHQHRGF FPAGTDVYGR MCAPPSTAAS  360
VVAHRSSEYG GMQAQAGLLP DAVMSYEHVH P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-25	242	309	10	77	Probable WRKY transcription factor 4
2lex_A	1e-25	242	309	10	77	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020180591.1	1e-123	probable WRKY transcription factor 28
TrEMBL	M8D5Y8	0.0	M8D5Y8_AEGTA; Uncharacterized protein
STRING	EMT31776	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP623	37	173

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47260.1	9e-37	WRKY DNA-binding protein 23