PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT31604 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 196aa MW: 22071.8 Da PI: 5.6164 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 46 | 6.9e-15 | 1 | 31 | 21 | 51 |
HHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 21 lKKAeELSvLCdaevaviifsstgklyeyss 51 +KKA EL vLCda+va+i+fsstgk +e++s EMT31604 1 MKKARELTVLCDAQVAIIMFSSTGKYHEFCS 31 8****************************96 PP | |||||||
2 | K-box | 65.6 | 1.8e-22 | 43 | 135 | 1 | 98 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 yq++ g+sl+ +++e++q+ l+ Lk+ ++nL++e+R+++GedL+ L+++eL+ Leq+++ +lk ++++++q+e+ +kk k qe+ k+L+++l EMT31604 43 YQQAIGTSLWIEQYENMQRTLSHLKDINRNLRTEIRQRMGEDLDALEFEELRDLEQNVDAALK-----EYHVITTQTETYKKKVKHSQEAYKNLQQEL 135 67888999******************************************************7.....59************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.2E-4 | 1 | 32 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.6E-11 | 1 | 29 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-19 | 1 | 67 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 15.502 | 1 | 33 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.6E-14 | 54 | 135 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 11.352 | 56 | 141 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MKKARELTVL CDAQVAIIMF SSTGKYHEFC STGTDIKGIF DRYQQAIGTS LWIEQYENMQ 60 RTLSHLKDIN RNLRTEIRQR MGEDLDALEF EELRDLEQNV DAALKEYHVI TTQTETYKKK 120 VKHSQEAYKN LQQELGMRED PAYGFVDNPA AGGWDGVAAV AMGGGSAADM YAFRVVPSQP 180 NLHGMAYGGS HDLRLG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the development of floral organs. Required for normal development of lodicules and stamens (whorls 2 and 3). May function as a heterodimer with MADS4. {ECO:0000269|PubMed:12506001, ECO:0000269|PubMed:12905025, ECO:0000269|PubMed:14558657}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM502879 | 0.0 | AM502879.1 Triticum aestivum mRNA for MIKC-type MADS-box transcription factor WM13 (WM13 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020159050.1 | 1e-145 | MADS-box transcription factor 16 | ||||
Swissprot | Q944S9 | 1e-114 | MAD16_ORYSJ; MADS-box transcription factor 16 | ||||
TrEMBL | M8CB61 | 1e-146 | M8CB61_AEGTA; MADS-box transcription factor 16 | ||||
STRING | EMT31604 | 1e-147 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5728 | 35 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 8e-43 | MIKC_MADS family protein |