PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

EMT31351

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

MYB

Protein Properties

Length: 266aa MW: 28982.3 Da PI: 4.8585

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT31351	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.5	1.5e-13	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W+ eEd +l + v+++ + +W t +++ g++R++k+c++rw++yl EMT31351 14 RGPWSREEDAILRNFVRRFANAgNWITLPQKAGLNRCGKSCRLRWLNYL 62 89****************999**********************97 PP
2	Myb_DNA-binding	41.8	2.5e-13	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T eEd l++ + G++ W+ Ia++++ gRt++++k++w++ EMT31351 69 GGFTDEEDSLILSLYGDIGSR-WSVIAAKLP-GRTDNDVKNHWNT 111 569****************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.538	9	62	IPR017930	Myb domain
SuperFamily	SSF46689	5.19E-26	11	109	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-8	13	64	IPR001005	SANT/Myb domain
Pfam	PF00249	1.0E-11	14	62	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.9E-20	15	69	IPR009057	Homeodomain-like
CDD	cd00167	7.95E-7	16	62	No hit	No description
PROSITE profile	PS51294	19.081	63	117	IPR017930	Myb domain
SMART	SM00717	7.1E-12	67	115	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-11	69	111	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.4E-21	70	116	IPR009057	Homeodomain-like
CDD	cd00167	2.52E-10	71	113	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MGRSPCCDKA SVKRGPWSRE EDAILRNFVR RFANAGNWIT LPQKAGLNRC GKSCRLRWLN 60 YLRPALRHGG FTDEEDSLIL SLYGDIGSRW SVIAAKLPGR TDNDVKNHWN TKLKKSPHGV 120 DQSSLPPPPP AMVNLGAALA TLDDGGELTR ESEQLYAELM GLIEPQSTTR ESTGEVMSSP 180 SSFGTSPTAS SFAAGSSATW PVDVHDTILW PESSGSGTVE FDDPCVAHTF GPASTPDSFQ 240 DLLASSYDEV IATQELLYLG MNWSEF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	5e-24	14	116	7	107	B-MYB
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK241370	1e-121	AK241370.1 Oryza sativa Japonica Group cDNA, clone: J065154C10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020157086.1	0.0	transcription factor RAX2-like
TrEMBL	M8D4V6	0.0	M8D4V6_AEGTA; Transcription factor RAX2
STRING	EMT31351	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP135	38	412

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	5e-63	myb domain protein 36