PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT28996 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | G2-like | ||||||||
Protein Properties | Length: 480aa MW: 52617.5 Da PI: 8.7532 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.4 | 1.2e-31 | 205 | 260 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH++Fv a++qLGG+++AtPk+i+e+mkv+gLt+++vkSHLQkYRl+ EMT28996 205 KTRRCWSPELHRHFVAALHQLGGPQVATPKQIREMMKVDGLTNDEVKSHLQKYRLH 260 68****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-28 | 202 | 263 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.823 | 202 | 262 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.79E-16 | 203 | 263 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.5E-25 | 205 | 260 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.6E-7 | 207 | 258 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010092 | Biological Process | specification of organ identity | ||||
GO:0010629 | Biological Process | negative regulation of gene expression | ||||
GO:0048449 | Biological Process | floral organ formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 480 aa Download sequence Send to blast |
MPLDLGLDLK LFVAKTAGRL AAAAKEAPAV DACIRGLEEE RRKIEVFRRE LPLCARLLAD 60 VIEFMKEEAA KRSERRDADD NDKRKWMSTA QLWVDSRATD AADPVKEQRK ESALSKPMLL 120 GGAIGAPMAA SCRAMPPPAA PQYFGRGDKI VGTQGLPALP MISPAANRQF SPPVDDRHQA 180 IAAKFAAPMP PPGPGLQTHD QQSRKTRRCW SPELHRHFVA ALHQLGGPQV ATPKQIREMM 240 KVDGLTNDEV KSHLQKYRLH NQRCPSSSSA SHPVMLVGDL WAHQEQSSSQ SRSPEGPLQL 300 SVSGVAVSAL TGSDSSEEDG SVNLVLPAEL PFSDQQQHVS IAAKPRSSEP KELKDKSAMV 360 ALSVFSFAWR PRLNRAILFC NCVSVVVCSS PSVPRVPFAA GWGALALGAA ISLFLESSGK 420 REFLFQDDRV ILPPFLNCSC ILRGNLLLYS DYGEVFRNKL LILSEGFDLQ CKMTVWRTDK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 8e-14 | 205 | 263 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 8e-14 | 205 | 263 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 8e-14 | 205 | 263 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 8e-14 | 205 | 263 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 8e-14 | 205 | 263 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 8e-14 | 205 | 263 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 8e-14 | 205 | 263 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 8e-14 | 205 | 263 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00475 | DAP | Transfer from AT4G37180 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF951944 | 0.0 | JF951944.1 Triticum aestivum clone TaMYB61 MYB-related protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020199780.1 | 0.0 | uncharacterized protein LOC109785601 | ||||
TrEMBL | M8CYP1 | 0.0 | M8CYP1_AEGTA; Two-component response regulator ARR2 | ||||
STRING | EMT28996 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1817 | 37 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37180.1 | 8e-41 | G2-like family protein |