PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT28775 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | bHLH | ||||||||
Protein Properties | Length: 294aa MW: 32177.7 Da PI: 4.6245 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.9 | 2.8e-11 | 218 | 258 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ +L+ l+P+ +K++ +++Le+AveY+k +q EMT28775 218 RKRRERINERLKTLQNLVPNG-----TKVDISTMLEEAVEYVKFMQ 258 9******************97.....8****************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.205 | 208 | 257 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.62E-14 | 209 | 273 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.4E-13 | 213 | 268 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.9E-12 | 214 | 263 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.38E-12 | 217 | 262 | No hit | No description |
Pfam | PF00010 | 1.0E-8 | 218 | 258 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0016049 | Biological Process | cell growth | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048766 | Biological Process | root hair initiation | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MPMETDMMSQ FLGGDHHCFA YEQQDESMEA MAAMFLPGLD TDSNSSSSCL NYDVSPQCWS 60 QPQPQPGHSS SVTSFLDPAH GYESFEFPVM DPFPHAEFQS HCTDIPYLVG GGEDLSPLDS 120 NCAPAGGEEA ANDHTPVTNK RKSRAATTAS KKAKKAGKKD FTSNDIEGDE TYVIDPQSSS 180 SCTSEDGDLD GNAKSSSKKT GTRASRGAAT DPQSLYARKR RERINERLKT LQNLVPNGTK 240 VDISTMLEEA VEYVKFMQLQ IKLLSSDDMW MYAPLAYNGI NVSSLEMHIA ALQK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020153858.1 | 0.0 | transcription factor bHLH69-like | ||||
TrEMBL | A0A453B6I8 | 0.0 | A0A453B6I8_AEGTS; Uncharacterized protein | ||||
TrEMBL | W5C672 | 0.0 | W5C672_WHEAT; RSL4-2DS | ||||
STRING | Traes_2DS_7C9C33E09.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12496 | 29 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27740.1 | 9e-51 | root hair defective 6-like 4 |