PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT28356
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 73aa    MW: 8575.1 Da    PI: 10.4564
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT28356genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.53.6e-1127646399
              TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
        B3 63 kGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99
              + W++Fv++n+L+eg ++vF+l++  ++++++v+v+rk
  EMT28356 27 RRWSKFVRDNRLREGYVCVFELMKGtRKATMTVHVLRK 64
              56*******************99777*********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.924165IPR003340B3 DNA binding domain
SuperFamilySSF1019365.1E-101563IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-92663IPR015300DNA-binding pseudobarrel domain
PfamPF023626.0E-92764IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 73 aa     Download sequence    Send to blast
MVVAGEMMVD EKGRYYHGSV ARGFNCRRWS KFVRDNRLRE GYVCVFELMK GTRKATMTVH  60
VLRKVDDKFV LLS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193657.12e-28B3 domain-containing protein Os12g0592300-like
SwissprotQ2QMT22e-28Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLM8CX374e-46M8CX37_AEGTA; Uncharacterized protein
STRINGEMT283567e-47(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179