PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT26453

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

ZF-HD

Protein Properties

Length: 356aa MW: 39922.5 Da PI: 8.1675

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT26453	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	87.1	1.8e-27	23	81	2	59
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 e+v+Y eC +NhA + Ggh++DGCgE+mp +++ ++a++ kCaACgCHRnFHR+ + + EMT26453 23 EEVTYMECGRNHALASGGHVMDGCGEWMPLGDHNpADASSYKCAACGCHRNFHRKVMMK 81 5799************************999999*****************9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	1.1E-22	25	78	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	1.0E-15	25	77	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	2.6E-22	26	77	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	22.885	27	78	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	2.28E-12	159	225	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.2E-21	163	225	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.6E-17	167	223	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MDVKYPNGSV KKVRQAAVAP GVEEVTYMEC GRNHALASGG HVMDGCGEWM PLGDHNPADA 60 SSYKCAACGC HRNFHRKVMM KRSPPPPPPM VATVLHGLPQ RREETLEDQL PGVDSDTDSD 120 GTEYDSDATE YDSEGTDRPL GELQIQRLTA QRLPATAPPP HGVISKRKRS RTMFTADQKL 180 RMQELSEHLG WRLQKRDKDI IEARCHDIGV SKNVFRNWMN NKKRKRLPQL ASEPSCVTTI 240 QPLSATPWAK ITSADEESWW IVKTRVGRWE AIEIGTTIRS DSRLAPKVVF HGVPLEIMTI 300 LTTKLTAKDT WDTLRTIRLG VAHVYEATLA TLSRHYSDIR FINCEMVETL PCASQA

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MDVKYPNGSV KKVRQAAVAP GVEEVTYMEC GRNHALASGG HVMDGCGEWM PLGDHNPADA  60
SSYKCAACGC HRNFHRKVMM KRSPPPPPPM VATVLHGLPQ RREETLEDQL PGVDSDTDSD  120
GTEYDSDATE YDSEGTDRPL GELQIQRLTA QRLPATAPPP HGVISKRKRS RTMFTADQKL  180
RMQELSEHLG WRLQKRDKDI IEARCHDIGV SKNVFRNWMN NKKRKRLPQL ASEPSCVTTI  240
QPLSATPWAK ITSADEESWW IVKTRVGRWE AIEIGTTIRS DSRLAPKVVF HGVPLEIMTI  300
LTTKLTAKDT WDTLRTIRLG VAHVYEATLA TLSRHYSDIR FINCEMVETL PCASQA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	1e-158	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020181134.1	1e-126	zinc-finger homeodomain protein 9-like
TrEMBL	M8BXC6	0.0	M8BXC6_AEGTA; ZF-HD homeobox protein
STRING	EMT26453	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3646	33	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15210.1	2e-34	homeobox protein 30