PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT24926
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family bHLH
Protein Properties Length: 526aa    MW: 59204 Da    PI: 8.8035
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT24926genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.91.9e-13244308455
               HHHHHHHHHHHHHHHHHHHHHCTSCCC................TTS-STCHHHHHHHHHHHHHHH CS
       HLH   4 ahnerErrRRdriNsafeeLrellPkas.............kapskKlsKaeiLekAveYIksLq 55 
                hn  E+rRR +iN+++  L++l+P++s             +      +Ka++L  A+eY+k+Lq
  EMT24926 244 VHNLSEKRRRCKINEKMKALQSLVPNSSkltevmlygrrrhRLLLLQTDKASMLDDAIEYLKHLQ 308
               6*************************888********99996677778****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.0E-17238322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-16238326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.291240307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.28E-14243312No hitNo description
PfamPF000106.3E-11244308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.1E-14246313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MADYFASDAL FTDHFRRCFR MRKTVFDCLS QRQEAARKDV ERAFGVLPDE GDDAAVALEF  60
KNMGDPIQLP DQNPATFEEF IEMHQQIRHQ PTHEQLKEYL IEHQWALQLF HGPESRGKAR  120
QSTPVRSRSV AAWALPPPRE QRRRPVAGAP FLGSFSVLAA AGDQSSSGWW RALLLSWSPV  180
RRSGGRQRAM MDQEHLDFIM RHHHHQDGMG FVPADRGDSE EALGSSESEP AGRPRGKRAR  240
AAEVHNLSEK RRRCKINEKM KALQSLVPNS SKLTEVMLYG RRRHRLLLLQ TDKASMLDDA  300
IEYLKHLQLQ VQMLSMRNGM YRPSVNLPGA PDQLPTSQMC AALNRVDASS NHPSSMLPMN  360
HFLGAMSGTR HLYGPPNQDR PRHEPLVLSS VPCTTTREPP FLLGPSQGSP LRSLQLTLPA  420
EMIFQEEAML KHRLSSTQET TSVPGHEMKQ ETPAARAGHF DACSIWKNQS QDMTPNNPES  480
VLFAPHLRST NANSKISWLK IDILENSENA LFGNGNADSG LRAESK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3606561e-179AK360656.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1122L11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165312.10.0transcription factor SPATULA-like isoform X1
TrEMBLM8CN340.0M8CN34_AEGTA; Transcription factor SPATULA
STRINGEMT249260.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33363776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.11e-24bHLH family protein