PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT21637 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | C3H | ||||||||
Protein Properties | Length: 452aa MW: 48344.3 Da PI: 8.0392 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.7 | 2.6e-10 | 51 | 77 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C +++rtG C yG++C+++H++ EMT21637 51 PGEANCVYYLRTGACGYGETCRYNHPR 77 57899********************96 PP | |||||||
2 | zf-CCCH | 38.3 | 2.2e-12 | 123 | 149 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C +++++GtCk+G++Ck++H++ EMT21637 123 PGQPPCEYYMKNGTCKFGSNCKYNHPR 149 5899*********************96 PP | |||||||
3 | zf-CCCH | 17.6 | 6.8e-06 | 170 | 186 | 3 | 19 |
S---SGGGGTS--TTTT CS zf-CCCH 3 telCrffartGtCkyGd 19 +++C+++ +tG+Ck+G+ EMT21637 170 EKECSYYIKTGHCKFGS 186 689*************8 PP | |||||||
4 | zf-CCCH | 38.4 | 2e-12 | 286 | 312 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tGtCk+G++Ck++H++ EMT21637 286 PGQPECHHYMKTGTCKFGSTCKYNHPQ 312 5789*********************97 PP | |||||||
5 | zf-CCCH | 25.4 | 2.5e-08 | 335 | 357 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C ++++ G+Ck+G+ CkF H+ EMT21637 335 QPCLYYSQHGFCKFGPGCKFDHP 357 69********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.9E-5 | 50 | 77 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.291 | 50 | 78 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-7 | 52 | 77 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.93E-6 | 54 | 78 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-4 | 56 | 77 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 17.093 | 122 | 150 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.4E-7 | 122 | 149 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.1E-10 | 124 | 149 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-6 | 125 | 150 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-5 | 127 | 150 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 7.216 | 167 | 186 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-5 | 285 | 312 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.197 | 285 | 313 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.9E-10 | 287 | 312 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.03E-6 | 288 | 312 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.9E-5 | 331 | 358 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.389 | 331 | 359 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.24E-6 | 333 | 361 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.3E-4 | 335 | 356 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.4E-6 | 335 | 357 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 452 aa Download sequence Send to blast |
MESYAASPKD GGGGGAEGGR ADAATGLEES MWRLGLAGGE EAAGEGLPER PGEANCVYYL 60 RTGACGYGET CRYNHPRDRA AASSWDLLLT TRQSLIMTDR FNYSWSFDGG TRTARTVEYP 120 ERPGQPPCEY YMKNGTCKFG SNCKYNHPRE GGSVQPVVLN SCGYPLRLGE KECSYYIKTG 180 HCKFGSTSSW QLGRPSVLPG SFFPGSYPPM MHPSAVMPMQ GWNPYMPPIN QVASAGGQQT 240 VQAGPLYGLS HQGPPSAVAY GSNYASLSSS AWPSSDKQEV VFPERPGQPE CHHYMKTGTC 300 KFGSTCKYNH PQYLSTPRSN YMLSPLGLPI RPGAQPCLYY SQHGFCKFGP GCKFDHPLGA 360 LSYSPSASSL GDVPIAPYPL SLPVAPMAPS PSSSGLRPDY ILAKDSSANQ PASPGTTFGN 420 AGQLSKIYAP HMLLRPPTSA TGATVTIHGG EF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK355379 | 0.0 | AK355379.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1019O17. | |||
GenBank | AK361294 | 0.0 | AK361294.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1137A21. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020190679.1 | 0.0 | zinc finger CCCH domain-containing protein 5-like | ||||
Swissprot | Q5NAV3 | 0.0 | C3H5_ORYSJ; Zinc finger CCCH domain-containing protein 5 | ||||
TrEMBL | M8C3I4 | 0.0 | M8C3I4_AEGTA; Zinc finger CCCH domain-containing protein 5 | ||||
STRING | EMT21637 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2761 | 38 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.3 | 2e-95 | C3H family protein |
Publications ? help Back to Top | |||
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