PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT18776
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family GRAS
Protein Properties Length: 401aa    MW: 43741.8 Da    PI: 6.9596
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT18776genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS176.42.1e-541053251220
      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
               l++lL++cA  v++g++ +a+ +L+++ +las d+  ++qRlaa+f+ ALa +l++  ++l++al +s++s+ +   + aa++  +++ P+lk+++lt+N+
  EMT18776 105 LISLLYQCASEVAAGEFDRANLCLEHIMQLASLDApHTLQRLAAVFADALACKLLKLLPGLSRALLSSSSSD-DAHLVPAARRHMFDMLPFLKLAYLTTNH 204
               5799*******************************99****************************9888874.5555567888999*************** PP

      GRAS 101 aIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL....r 195
               aIlea+ege+ vH++D++  + +++QW+aL++a+  R++g+p+lRiT+v++    ske l  +   L + Ae++++pf+fn+ v+ rled+++++L    r
  EMT18776 205 AILEAMEGERFVHVVDLSgpAANPAQWIALFHAFRGRRDGTPNLRITAVHE----SKEFLAGMSAVLVREAEAFDIPFQFNA-VEARLEDMDFDALrhnlR 300
               *****************866899****************************....9**************************.7999**999987755447 PP

      GRAS 196 vkpgEalaVnlvlqlhrlldesvsl 220
               v++gEalaV+++lqlhrll+ + + 
  EMT18776 301 VRSGEALAVSVALQLHRLLAADDTG 325
               888***************9766544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098530.78979401IPR005202Transcription factor GRAS
PfamPF035147.4E-52105325IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MRTKMALRVP QMRPALERPE VPQETSSPHR KGVEPRSWGG IASIMFQQQQ PPPQPQPQPQ  60
RQQQQEDVMS SATSSPASTL YSPTPYAFAG TSVQELSSDQ CSVRLISLLY QCASEVAAGE  120
FDRANLCLEH IMQLASLDAP HTLQRLAAVF ADALACKLLK LLPGLSRALL SSSSSDDAHL  180
VPAARRHMFD MLPFLKLAYL TTNHAILEAM EGERFVHVVD LSGPAANPAQ WIALFHAFRG  240
RRDGTPNLRI TAVHESKEFL AGMSAVLVRE AEAFDIPFQF NAVEARLEDM DFDALRHNLR  300
VRSGEALAVS VALQLHRLLA ADDTGGKRQG GLTPLQIIAR SSPSSFGELL ERELNTRLQL  360
SPDASAFSSM SPQSPIGGHF PAGGAQRATI GRVNLTVDWT G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1811130925217Protein SCARECROW
5b3h_A1e-1811130924216Protein SCARECROW
5b3h_D1e-1811130924216Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152680.10.0scarecrow-like protein 3
TrEMBLR7W9P50.0R7W9P5_AEGTA; Uncharacterized protein
STRINGEMT187760.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.14e-53scarecrow-like 3