PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT18619 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | WRKY | ||||||||
Protein Properties | Length: 258aa MW: 28434.6 Da PI: 5.8071 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 63 | 5.3e-20 | 84 | 150 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS......STTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae......dpkvveitYegeHnhe 59 Dg++WrKYGqK ++ +++prsYY+Ct++ +C+++k v+++++ dp + ++Y g+H+++ EMT18619 84 YDGHQWRKYGQKIINHTKHPRSYYKCTYKqeqDCRATKTVQQQQQddgvddDPAMYAVVYYGQHTCK 150 59**************************98999********9875222222799***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.1E-23 | 78 | 150 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-21 | 79 | 150 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.6E-30 | 83 | 151 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.2E-24 | 85 | 150 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 15.652 | 85 | 129 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MFESILDCSA KAIAALKLLR LDHSQVDDAV LPTAMVDDKT RVRKIVTGDG EKDGDDNAKP 60 LRRQRKRRRL ADDSVALETP VPHYDGHQWR KYGQKIINHT KHPRSYYKCT YKQEQDCRAT 120 KTVQQQQQDD GVDDDPAMYA VVYYGQHTCK PGQTDAAVVE TASTGRCGEG GGEELARSSS 180 QCSNISVTCS SVVVDHHQTT TASLESSCNL LDMAGDLATA EVNQYDQLFD VASFSPLGLG 240 TAWEMDMSGH GLQKFGGW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 2e-16 | 85 | 150 | 10 | 69 | OsWRKY45 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 64 | 68 | RKRRR |
2 | 65 | 69 | KRRRL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020196408.1 | 0.0 | WRKY transcription factor 1-like | ||||
TrEMBL | A0A453KD60 | 0.0 | A0A453KD60_AEGTS; Uncharacterized protein | ||||
STRING | EMT18619 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3258 | 30 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01900.1 | 1e-15 | WRKY DNA-binding protein 62 |