PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT12830
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 258aa    MW: 27295 Da    PI: 10.0785
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT12830genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.56.8e-20711411890
               --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
        B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
               lp   a +  g+  +++ l + d  g+ W+++++y+++s++yvltkGW++Fvk++gL +gD+v F+++ + + 
  EMT12830  71 LPSASA-AVPGE-CKGVLLNFDDAVGKMWRFRYSYWNSSQTYVLTKGWSRFVKEKGLHAGDVVGFYRSASGNN 141
               555555.33333.3678999**********************************************7655444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100178.88E-1655136No hitNo description
SMARTSM010190.006767151IPR003340B3 DNA binding domain
SuperFamilySSF1019361.83E-1970149IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-2480158IPR015300DNA-binding pseudobarrel domain
PfamPF023628.7E-1782144IPR003340B3 DNA binding domain
PROSITE profilePS5086311.36487151IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDSARSCLVD DVSSGASTGK KASPAPAVPA TKPLQRVGSG ASAVMDAPEP GAEADSGRVG  60
RLPSSKYKGV LPSASAAVPG ECKGVLLNFD DAVGKMWRFR YSYWNSSQTY VLTKGWSRFV  120
KEKGLHAGDV VGFYRSASGN NQLFIDCKLR SKTTTTTTTT TSLNAAAAPS PAPVTRTVRL  180
FGVDLLTAPA PEQEEYGMAK TNKRSMDASV AAPTPAHAVW KKRCVDFALT YRHATTSQCP  240
RPRDQLKGVQ AAGCAFAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-315415121118DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3719411e-179AK371941.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2143K20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159692.11e-121AP2/ERF and B3 domain-containing protein Os05g0549800-like
SwissprotQ6L4H42e-52Y5498_ORYSJ; AP2/ERF and B3 domain-containing protein Os05g0549800
TrEMBLN1QX910.0N1QX91_AEGTA; AP2/ERF and B3 domain-containing protein
STRINGEMT128300.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2516134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-33related to ABI3/VP1 2
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]