PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT11155
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family bHLH
Protein Properties Length: 238aa    MW: 26751 Da    PI: 8.4831
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT11155genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.91.1e-1565117155
               CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
               r+++hn+ Er RR+++N+ ++ Lr+llP  +   ++kK+s  +++ ++++YI +Lq
  EMT11155  65 RKMSHNAYERDRRKQLNEQYSSLRSLLPDdD---HNKKMSIPTTVSRVIKYIPELQ 117
               799**************************66...*******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-1762135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.47E-1263120No hitNo description
PROSITE profilePS5088814.87564116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-1465133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.7E-1365117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-1070122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MGHQHQMFND PFASSMSSLE EDMFSGAGGY HHLTPSMQWP GLDNDIPSAP AANNATSSGG  60
SGSHRKMSHN AYERDRRKQL NEQYSSLRSL LPDDDHNKKM SIPTTVSRVI KYIPELQKEV  120
DGLEKKKEEL RRASYEQGAM RQNTAPIVSA TCLDDREIMV QVSQVSTMAG ALPMSKCIKV  180
LENQGLRLIN SSTSAFQNRT FYSLHLQRTQ RTMSKEGQTF CNELENVVKQ KAGQHLHH
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA motif 5'-CACGTGG-3' in the promoter of iron (Fe) deficiency-inducible genes as well as of genes involved in iron homeostasis, thus contributing to basal tolerance to iron deficiency, iron uptake from soil and iron transport, particularly during seed maturation and germination. Promotes the accumulation of mugineic acid family phytosiderophores (MAs). Required for ethylene-mediated signaling during iron deficiency responses. Improves growth and yield, especially in calcareous soil with low iron availability. Promotes iron concentration in shoots and grain. {ECO:0000250|UniProtKB:Q0JFZ0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3712100.0AK371210.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2128C09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193396.10.0transcription factor ORG2-like
SwissprotA2WZ606e-83IRO2_ORYSI; Protein IRON-RELATED TRANSCRIPTION FACTOR 2
TrEMBLA0A3B6H6C51e-180A0A3B6H6C5_WHEAT; Uncharacterized protein
TrEMBLA0A453GPD51e-180A0A453GPD5_AEGTS; Uncharacterized protein
TrEMBLM8BBV91e-180M8BBV9_AEGTA; Transcription factor ORG2
STRINGEMT111550.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32803472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.13e-31bHLH family protein