PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

MYB

Protein Properties

Length: 438aa MW: 48077.3 Da PI: 4.7426

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT09579	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.9	3.2e-15	42	89	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +l +vk++G +W+ + + g+ R++k+c++rw ++l EMT09579 42 KGPWTPAEDAILEAYVKKHGVQNWNVVQKDTGLLRCGKSCRLRWANHL 89 79****************************99********9986 PP
2	Myb_DNA-binding	21.6	5.1e-07	95	123	1	30
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 +g +T+eE+ l+++++ ++G++ W++ a++ EMT09579 95 KGTFTKEEENLIIKLHSKMGNK-WARMAAR 123 799*****************.99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	21.81	37	93	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-21	38	92	IPR009057	Homeodomain-like
SMART	SM00717	2.0E-13	41	91	IPR001005	SANT/Myb domain
Pfam	PF00249	9.0E-14	42	89	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.35E-23	43	119	IPR009057	Homeodomain-like
CDD	cd00167	1.00E-10	44	89	No hit	No description
PROSITE profile	PS50090	6.446	90	123	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	4.7E-13	93	123	IPR009057	Homeodomain-like
SMART	SM00717	0.24	94	135	IPR001005	SANT/Myb domain
Pfam	PF00249	4.2E-6	95	123	IPR001005	SANT/Myb domain
CDD	cd00167	0.00427	97	123	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence Send to blast
MTRAKSESGR EMPGPDQADL ASRDDDSARE SPRRRAGPQL KKGPWTPAED AILEAYVKKH 60 GVQNWNVVQK DTGLLRCGKS CRLRWANHLR PDLKKGTFTK EEENLIIKLH SKMGNKWARM 120 AARTNVEHIV VSTATMTASN EEQHESTDFS FSEKLANDLL HGNGLYDPSS TWGDFIDDQE 180 ALSYAPQLPD VSLSNLPGLY FESKNYGFMD QVNQAEILKE SEISFPWLNA AINGTFDGSH 240 AFSNGNFSTS RPMTGSWKME LPSFQFAGSD PNNWSTYSRT CAAQGANFGD PCMRSSAAMA 300 SAKFEHMCMI PGNSGQLEEP LPEAHAVSSA ENQQLSVGSS SASTGSPCDA MVETSELHFL 360 ERDPNLYALV NSCSPASPLC QASPDELPCS DFSSAASPVF VSDEPTIPEY DKGFLLPHPE 420 DSRADAFSHW NAMPPIFQ

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence Send to blast

MTRAKSESGR EMPGPDQADL ASRDDDSARE SPRRRAGPQL KKGPWTPAED AILEAYVKKH  60
GVQNWNVVQK DTGLLRCGKS CRLRWANHLR PDLKKGTFTK EEENLIIKLH SKMGNKWARM  120
AARTNVEHIV VSTATMTASN EEQHESTDFS FSEKLANDLL HGNGLYDPSS TWGDFIDDQE  180
ALSYAPQLPD VSLSNLPGLY FESKNYGFMD QVNQAEILKE SEISFPWLNA AINGTFDGSH  240
AFSNGNFSTS RPMTGSWKME LPSFQFAGSD PNNWSTYSRT CAAQGANFGD PCMRSSAAMA  300
SAKFEHMCMI PGNSGQLEEP LPEAHAVSSA ENQQLSVGSS SASTGSPCDA MVETSELHFL  360
ERDPNLYALV NSCSPASPLC QASPDELPCS DFSSAASPVF VSDEPTIPEY DKGFLLPHPE  420
DSRADAFSHW NAMPPIFQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	2e-19	17	121	2	105	MYB TRANSFORMING PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter. {ECO:0000269\|PubMed:9150608}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By gibberellin in aleurone cells. {ECO:0000269\|PubMed:9150608}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK375052	0.0	AK375052.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3084G04.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020181615.1	0.0	transcription factor GAMYB-like isoform X1
Refseq	XP_020181616.1	0.0	transcription factor GAMYB-like isoform X1
Refseq	XP_020181617.1	0.0	transcription factor GAMYB-like isoform X1
Swissprot	A2WW87	1e-119	GAM1_ORYSI; Transcription factor GAMYB
TrEMBL	M8BRZ1	0.0	M8BRZ1_AEGTA; Transcription factor GAMYB
STRING	EMT09579	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3947	36	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.2	8e-41	myb domain protein 101