PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT09276
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB
Protein Properties Length: 558aa    MW: 61130.9 Da    PI: 6.1679
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT09276genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33e-17220267148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEde+l+  ++++G g+W++ +++ g+ R++k+c++rw +yl
         EMT09276 220 KGPWTPEEDEKLLAHIEEHGHGSWRALPSKAGLQRCGKSCRLRWTNYL 267
                      79********************************************97 PP
2Myb_DNA-binding49.11.3e-15273318148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ +E++ +++++++lG++ W++Ia ++  +Rt++++k++w+++l
         EMT09276 273 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLS-RRTDNEIKNYWNTHL 318
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF750051.14E-8184IPR023296Glycosyl hydrolase, five-bladed beta-propellor domain
Gene3DG3DSA:2.115.10.207.4E-5584IPR023296Glycosyl hydrolase, five-bladed beta-propellor domain
Gene3DG3DSA:1.10.10.606.4E-26211270IPR009057Homeodomain-like
PROSITE profilePS5129417.326215267IPR017930Myb domain
SuperFamilySSF466892.43E-29217314IPR009057Homeodomain-like
SMARTSM007172.6E-14219269IPR001005SANT/Myb domain
PfamPF002491.2E-15220267IPR001005SANT/Myb domain
CDDcd001676.21E-12222267No hitNo description
PROSITE profilePS5129425.189268322IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.7E-25271322IPR009057Homeodomain-like
SMARTSM007172.6E-15272320IPR001005SANT/Myb domain
PfamPF002491.3E-14273318IPR001005SANT/Myb domain
CDDcd001679.81E-11275318No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010091Biological Processtrichome branching
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MAYEGLDGNG GVSIGLAVSE DGLRGWRRCS ESPALCSSED DDEWDVAGVG APCLVQMDGP  60
YDWRLYYMGV GKDGEAAIGM AYSEGQGLPR FNSYFDGVMD VLSSFAVSIT FIDHFVFFPF  120
PPLFSKCFLT QNCKQKRKLP YGLTNLDLVS QWRGPSIGEE LYVFLHPVTC TKTKPSKGHL  180
CHDDKLLCTQ LSALGFRKAA AYYATPMGRS PCCDKVGLKK GPWTPEEDEK LLAHIEEHGH  240
GSWRALPSKA GLQRCGKSCR LRWTNYLRPD IKRGKFSLQE EQTIIQLHAL LGNRWSAIAT  300
HLSRRTDNEI KNYWNTHLKK RLAKMGIDPV THKAASGAPV GTADDVRSAK AAASLSHMAQ  360
WESARLEAEG RLARESTMRT AASTPTSITL HPINLPEPTT SPCLGMLQPW QGAKLDLESP  420
TSTLTFIGNN NSVSLGISEG DPTTCKLRSD DPEREEDSVR KFLRQQQMQG LEGAERGDEH  480
IIGCEEPWFQ GTAGVGAGFT DMLHDALDCW GESSNGQAEL SGQVSGDGES SSSYWSGILG  540
MVVTSELPPS HPHPPAFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-2521832225128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3583250.0AK358325.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1073M23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161266.10.0myb-related protein 308-like
SwissprotQ9LE631e-103MY106_ARATH; Transcription factor MYB106
TrEMBLM8B5P10.0M8B5P1_AEGTA; Transcription factor MYB39
STRINGEMT092760.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56093758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.11e-102myb domain protein 16