 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
EMT09007 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
|
| Family |
ERF |
| Protein Properties |
Length: 335aa MW: 36504.5 Da PI: 7.4937 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| EMT09007 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 63.8 | 3.6e-20 | 73 | 122 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
+y+G+r+++ +g+W+AeIrdps+ r++lg+++taeeAa+a++a ++k++g
EMT09007 73 QYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTYDTAEEAARAYDAEARKIRG 122
69*******.**********965...4*************************98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 335 aa
Download sequence Send
to blast |
MRAGARLATT LGSPMAPLWP TFGILASSLP KDFLFPIQVI LLGCITKYKN FIVDAVQHDG 60
PAAKQVKRVR KNQYRGIRQR PWGKWAAEIR DPSKGVRVWL GTYDTAEEAA RAYDAEARKI 120
RGKKAKVNFP EDAPTVQKST LKPTAAKSAK LAPPPKACED EPFNHLSRGD NDLFAMFAFN 180
DKKVPAKPAE SVDSLLPVKP LVPTETFGMN MLSDQSSNSF GSTDFGWDDE VMTPDYTSVF 240
VPNAAAMPAY GEPAYLQGGA PKRMRNNFGV AVLPQGNVAQ DIPAFDHEMK YSLPYVESSS 300
DGSMDSLLLN GAMQDGASSG DLWSLDELFM AAGGY
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1gcc_A | 4e-20 | 72 | 130 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
| 2gcc_A | 4e-20 | 73 | 130 | 5 | 63 | ATERF1 |
| 3gcc_A | 4e-20 | 73 | 130 | 5 | 63 | ATERF1 |
| 5wx9_A | 9e-20 | 73 | 132 | 14 | 74 | Ethylene-responsive transcription factor ERF096 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | JN681191 | 0.0 | JN681191.1 Triticum aestivum ethylene responsive transcription factor 5a (ERF5a) mRNA, complete cds. |
