PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

MYB_related

Protein Properties

Length: 413aa MW: 44642.1 Da PI: 8.4858

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT07941	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48	2.9e-15	90	134	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++++ kqlG+g+W+ I++ + ++Rt+ q+ s+ qky EMT07941 90 PWTEEEHRKFLEGLKQLGKGDWRGISKNFVTTRTATQVASHAQKY 134 7*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.744	83	139	IPR017930	Myb domain
SuperFamily	SSF46689	3.73E-18	84	139	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.6E-18	86	138	IPR006447	Myb domain, plants
SMART	SM00717	2.7E-11	87	137	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.6E-12	88	133	IPR009057	Homeodomain-like
Pfam	PF00249	1.5E-12	90	134	IPR001005	SANT/Myb domain
CDD	cd00167	2.63E-10	90	135	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MEEEGARKAV LFRLFGVEVR GAEEDDDAEP MELKKSTSMP NLACASIVPI LLPGEASNDK 60 GYASDDGELA STPQLKRRRR KAQERKKGIP WTEEEHRKFL EGLKQLGKGD WRGISKNFVT 120 TRTATQVASH AQKYFLRQTN PGKKKRRASL FDVGIPAGHS YDDQLPSPQS VGTKLAPAEK 180 ILHTDRGDVP LPSYPGGIRG NSNNIQMQVE ELTDHVKKRS KFPTGTSLAA MAASGLELAM 240 SSSASSILEL SIAPPRCYGA VDAIKLVKGN QRGYVVVLAS HGDITEILAL ALEGPPWHRA 300 HELNHARSGV GFLLPSEEAA MTGEDGFFLC PCGSELPMAS IIGLCLHFAL HVHSLIGPWH 360 GNISRACYGH AISSCLLAVV MLAKGSGQKQ LAKPCQTQIF PLLSDHVGCT SRA

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MEEEGARKAV LFRLFGVEVR GAEEDDDAEP MELKKSTSMP NLACASIVPI LLPGEASNDK  60
GYASDDGELA STPQLKRRRR KAQERKKGIP WTEEEHRKFL EGLKQLGKGD WRGISKNFVT  120
TRTATQVASH AQKYFLRQTN PGKKKRRASL FDVGIPAGHS YDDQLPSPQS VGTKLAPAEK  180
ILHTDRGDVP LPSYPGGIRG NSNNIQMQVE ELTDHVKKRS KFPTGTSLAA MAASGLELAM  240
SSSASSILEL SIAPPRCYGA VDAIKLVKGN QRGYVVVLAS HGDITEILAL ALEGPPWHRA  300
HELNHARSGV GFLLPSEEAA MTGEDGFFLC PCGSELPMAS IIGLCLHFAL HVHSLIGPWH  360
GNISRACYGH AISSCLLAVV MLAKGSGQKQ LAKPCQTQIF PLLSDHVGCT SRA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	75	80	KRRRRK
2	75	86	KRRRRKAQERKK
3	76	86	RRRRKAQERKK
4	142	146	KKKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000269\|PubMed:12172034}.
UniProt	Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000250\|UniProtKB:Q7XC51}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by sucrose. Slightly repressed by gibberellic acid (GA). {ECO:0000269\|PubMed:12172034}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JF951934	0.0	JF951934.1 Aegilops speltoides clone TaMYB51 MYB-related protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020181078.1	0.0	transcription factor DIVARICATA-like
Swissprot	B8BI93	3e-80	MYBS2_ORYSI; Transcription factor MYBS2
Swissprot	Q7XC51	3e-80	MYBS2_ORYSJ; Transcription factor MYBS2
TrEMBL	M8B1R1	0.0	M8B1R1_AEGTA; Myb-like protein J
STRING	EMT07941	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10464	30	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61620.1	5e-31	MYB_related family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]