PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT06248 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | B3 | ||||||||
Protein Properties | Length: 644aa MW: 71692.4 Da PI: 8.1694 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.8 | 7.2e-17 | 293 | 383 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 f+k + +s+v k +l +p +f+ eh + + ++t++lede+g ++ ++ rk++ l++GW +Fv +gL +gD v+F+l+g ++f +v ++r+ EMT06248 293 FVKLMQKSHVVKGFWLGVPLNFCGEHL-P-KHDVTIVLEDEDGHGFDTNYLARKQG----LSGGWHGFVVRHGLMVGDAVIFQLVGPKRF--KVYILRE 383 899***********************5.3.3679****************555555....9************************98888..8888875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.2E-19 | 287 | 384 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.53E-22 | 289 | 383 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.04E-23 | 291 | 382 | No hit | No description |
Pfam | PF02362 | 1.9E-15 | 293 | 383 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.6E-18 | 293 | 384 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.478 | 293 | 384 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 644 aa Download sequence Send to blast |
MAIDEPIKVT PSPSPSSSAS SAPAPIIICF STPLNSFIYG KNFLGFLHAI FVDLFMWFLQ 60 IETERERKRG TPAGDPHSAK SKMRQKMVHP RHALLDERSS RHGDDDDFDP MGKGGTPAGD 120 SPHSARTKMG HKMSLAHRRL SFLDDGSGIS RHIAAAAAAA DDDGGAFELM KNTPVDDSDD 180 DFVPLIMMRT KNVKSGRGKH PGFQYKHKAR RTITKTYKRN KTENPARSKR HGKRKLEKKP 240 MLVDNNNISK SNKGTDADVE PEIPDDDGRK KYASALDRAL EVENKLPAEG PSFVKLMQKS 300 HVVKGFWLGV PLNFCGEHLP KHDVTIVLED EDGHGFDTNY LARKQGLSGG WHGFVVRHGL 360 MVGDAVIFQL VGPKRFKVYI LRENKFTTTD GPLGLLSLDT SMENNILEET SYEDVKSKKD 420 LELTKVITNK ASDNDSNDLF SEEAVNGGIR SAADPDPDFD AVKTFRAFKT VVDSSVIDRK 480 LVPDHQLWRY YKLCGARKAF LHRRLPKHIN PTLATGVIAE TASIAKGIRS YPTTSSSSFE 540 DLAAWKKTLE SFELLGMDVS FMRKRVDELL FLLDASPSDD HPSEGYEEAM KLERARATEK 600 VRALESKMAS LKDALKEMDM EMEEIAGEKR GHADAMLQLA AAPW |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 228 | 235 | KRHGKRKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020199236.1 | 0.0 | B3 domain-containing protein Os01g0234100-like | ||||
TrEMBL | M8BHR0 | 0.0 | M8BHR0_AEGTA; B3 domain-containing protein | ||||
STRING | EMT06248 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6080 | 23 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 6e-34 | B3 family protein |