PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT05789 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | ERF | ||||||||
Protein Properties | Length: 279aa MW: 29897.5 Da PI: 7.6738 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.3 | 1.9e-18 | 109 | 160 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+++AeIrd + r +r++lg+f ta+eAa a++ a+++++g+ EMT05789 109 SYRGVRRRP-WGKFAAEIRDTRR---RgARVWLGTFATADEAALAYDVAALRMRGP 160 69*******.**********433...24**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.92E-27 | 108 | 168 | No hit | No description |
PROSITE profile | PS51032 | 23.538 | 109 | 167 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.3E-35 | 109 | 173 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.33E-22 | 109 | 168 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-30 | 109 | 168 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.8E-14 | 109 | 159 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-10 | 110 | 121 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-10 | 133 | 149 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006457 | Biological Process | protein folding | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042542 | Biological Process | response to hydrogen peroxide | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MAIGAPRDTS NILEDVWATI MTETPSGCTP MPASSTSFVD QAGAEILQRL PSLGGGISMG 60 ADEWGELLSV ADAATPPVAE QPPLAAASPR GGEGQQSAAA GSKAALPKSY RGVRRRPWGK 120 FAAEIRDTRR RGARVWLGTF ATADEAALAY DVAALRMRGP RAHLNFPIEK VQRRLDLERD 180 NGQFLDAADH PTGRARRKRR RRSSATATDH ARTVDADVTA AYGGSDQMVS FTNSGRGHGT 240 PAVQDRRVMS ADVGGAVDRV IELEEIGGEY WDYLFPPVL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-25 | 108 | 168 | 4 | 64 | ATERF1 |
3gcc_A | 3e-25 | 108 | 168 | 4 | 64 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 195 | 201 | RRKRRRR |
2 | 196 | 200 | RKRRR |
3 | 196 | 202 | RKRRRRS |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00441 | DAP | Transfer from AT4G18450 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727710 | 2e-56 | KJ727710.1 Zea mays clone pUT5649 AP2-EREBP transcription factor (EREB165) gene, partial cds. | |||
GenBank | KU685412 | 2e-56 | KU685412.1 Saccharum spontaneum clone SES23E05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169227.1 | 0.0 | ethylene-responsive transcription factor ERF094-like | ||||
TrEMBL | M8AWK4 | 0.0 | M8AWK4_AEGTA; Ethylene-responsive transcription factor ERF091 | ||||
STRING | EMT05789 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11616 | 27 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 6e-20 | ethylene response factor 1 |