PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT05490

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

bHLH

Protein Properties

Length: 362aa MW: 38163.7 Da PI: 4.8494

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT05490	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.7	2e-08	186	233	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i ++ L++l+P + +k Ka +L + ++Y++sLq EMT05490 186 SHSLAERVRREKITLKMKMLQDLVPGC----NKVIGKALMLDEIINYVQSLQ 233 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.38E-9	180	237	No hit	No description
SuperFamily	SSF47459	3.66E-16	180	251	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.684	182	232	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.1E-17	182	249	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-5	186	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.4E-9	188	238	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MDGDYVSGLL MGSAGLDFGV PGLDAGFFET LCGAGGAGAA GLAAMFGDRA AGMPGLGGGG 60 QFGAAEGTGG CELGAASREG SSVSDPAWAK RKAPAAGAGK GKEAASCFAK MGEPTGPDSK 120 KCKIEEETVR PKVEEEAATA SDGSAGGERG RKQAKGKGSK SKQPAADEPP RDYVHVRARR 180 GQATDSHSLA ERVRREKITL KMKMLQDLVP GCNKVIGKAL MLDEIINYVQ SLQQQVEFLS 240 MKLSTVNPQL DFDTLSNLLH KDMNQALDPS ASTVFPLESA GTVYPLCDQA DLYQSFSSGA 300 MENQCSMGLL DMALPHAPQY PFQKQQQDFW EASAQNGLHM DHEQSQENAG QLQAADHPEI 360 EF

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MDGDYVSGLL MGSAGLDFGV PGLDAGFFET LCGAGGAGAA GLAAMFGDRA AGMPGLGGGG  60
QFGAAEGTGG CELGAASREG SSVSDPAWAK RKAPAAGAGK GKEAASCFAK MGEPTGPDSK  120
KCKIEEETVR PKVEEEAATA SDGSAGGERG RKQAKGKGSK SKQPAADEPP RDYVHVRARR  180
GQATDSHSLA ERVRREKITL KMKMLQDLVP GCNKVIGKAL MLDEIINYVQ SLQQQVEFLS  240
MKLSTVNPQL DFDTLSNLLH KDMNQALDPS ASTVFPLESA GTVYPLCDQA DLYQSFSSGA  300
MENQCSMGLL DMALPHAPQY PFQKQQQDFW EASAQNGLHM DHEQSQENAG QLQAADHPEI  360
EF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269\|PubMed:23161888}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK363517	0.0	AK363517.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2016D23.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020195708.1	0.0	transcription factor bHLH79-like isoform X3
Swissprot	Q9CAA9	4e-50	BH049_ARATH; Transcription factor bHLH49
TrEMBL	M8AUX5	0.0	M8AUX5_AEGTA; Transcription factor bHLH49
STRING	EMT05490	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP919	38	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	1e-51	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Tian C, et al. An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation. Mol. Syst. Biol., 2014. 10: p. 755 [PMID:25358340] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]