PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT03642
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C2H2
Protein Properties Length: 281aa    MW: 29757.9 Da    PI: 9.199
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT03642genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2193.9e-06200222123
               EEETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
               ++Cp C k+F+ +  L++H++tH
  EMT03642 200 HECPLCLKRFKKSRGLNVHMKTH 222
               78********************9 PP
2zf-C2H215.74.4e-05228249122
               EEETTTTEEESSHHHHHHHHHH CS
   zf-C2H2   1 ykCpdCgksFsrksnLkrHirt 22 
               ++C  C+ +F+++s L++H r+
  EMT03642 228 HPCVWCTSTFPTSSALRSHVRR 249
               78*****************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.3E-4200224IPR007087Zinc finger, C2H2
SMARTSM003550.0046200222IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.616200227IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.5E-5200218IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.06E-9200248No hitNo description
PROSITE patternPS000280202222IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.5E-6219248IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035523228248IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.871228258IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MAANANCMST NRHADDQPSL PPAISLASST HHPNRGLSSE EENLAFSLMM LASGIRDEHP  60
ASLDHVTTPS SPLPPHVTDV PAGVSQGAPA TEATSQTPAS VVVVASRQVP TQVPSPSSAV  120
AVRPNMVLEQ VVPPSQATGL VTVTQPAPGL ALASTQVHPI VATGKAPFSK PNKVSTRPIK  180
TVATMAENQT PQQESQQLLH ECPLCLKRFK KSRGLNVHMK THPDGRMHPC VWCTSTFPTS  240
SALRSHVRRS NTCGGNKPRR LAPIAAAAIA WHTIDLNMPE I
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176070.10.0sal-like protein 3
TrEMBLR7W5D90.0R7W5D9_AEGTA; PR domain zinc finger protein 14
STRINGEMT036420.0(Aegilops tauschii)