PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

EMT02561

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

MYB_related

Protein Properties

Length: 313aa MW: 35868.2 Da PI: 6.9697

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT02561	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30	1.2e-09	230	261	3	36
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRt 36 WT eE+ l++a++ +G++ W+ Ia+ ++ +R EMT02561 230 DWTIEEEHALINAHQVYGNR-WAEIAKVLP-RRN 261 6*****************.*******.775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.230.10	6.8E-11	114	179	IPR016143	Citrate synthase-like, small alpha subdomain
Pfam	PF00285	1.2E-6	135	179	IPR002020	Citrate synthase
SuperFamily	SSF48256	1.83E-9	142	179	IPR002020	Citrate synthase
PROSITE pattern	PS00480	0	147	159	IPR019810	Citrate synthase active site
PROSITE profile	PS51294	10.916	223	275	IPR017930	Myb domain
SuperFamily	SSF46689	2.11E-8	226	262	IPR009057	Homeodomain-like
SMART	SM00717	0.0032	227	273	IPR001005	SANT/Myb domain
Pfam	PF00249	4.9E-8	230	261	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.6E-10	230	261	IPR009057	Homeodomain-like
CDD	cd00167	6.47E-6	231	263	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006099	Biological Process	tricarboxylic acid cycle
GO:0003677	Molecular Function	DNA binding
GO:0046912	Molecular Function	transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MNDYVSCSCI LCSPSGFECG LRRRGEASKV VVIREKVAEL YESEQQWLRA AQMLSGIDLD 60 SGIRLKQAFV SVYMSLDFLS LGNLTIFLKT RMLDDTNKLS KCVQIARLYL EDDDDVVNAE 120 AFINKASFLV TNSNREILNL QYKVVPGYGH GVLRNTDPRY SCQREFTLKY LLEDPLFQLP 180 CGSGHDAKDT DGLGLHTMQM CCIHNYLLAP DICAQNAVWT NKMVSLQEDD WTIEEEHALI 240 NAHQVYGNRW AEIAKVLPRR NRVLLFVLRF FSPIAKVKDD KPSGLLKLQD AHNHRLNPRF 300 LDNFDHKLIP KYF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5uzp_A	3e-12	143	179	336	372	Citrate synthase, mitochondrial
5uzp_B	3e-12	143	179	336	372	Citrate synthase, mitochondrial
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Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	1e-129	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	N1QQ69	0.0	N1QQ69_AEGTA; COP9 signalosome complex subunit 4
STRING	EMT02561	0.0	(Aegilops tauschii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	9e-09	myb domain protein 3r-5