PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT01310 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 219aa MW: 24188.6 Da PI: 10.6089 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 37.2 | 4.9e-12 | 130 | 157 | 29 | 56 |
HHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 29 ereeLAkklgLterqVkvWFqNrRakek 56 e+++LA +lgL+ rqV vWFqNrRa+ k EMT01310 130 EKRDLAGQLGLKPRQVEVWFQNRRARTK 157 7889**********************98 PP | |||||||
2 | HD-ZIP_I/II | 92.5 | 4.6e-30 | 89 | 191 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeper..............KvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 +kk+rl++eq++lLE+sF++++ L++ r K +la +Lgl+prqv+vWFqnrRARtk+kq+E d+e L+r++++l+++n+rL++e EMT01310 89 RKKLRLTAEQAALLEKSFRAHNVLSHVRpclllnlslkckveKRDLAGQLGLKPRQVEVWFQNRRARTKLKQTELDCELLRRWCERLSDDNARLRSEL 186 69*******************998764333333333333333899****************************************************9 PP HD-ZIP_I/II 85 eeLre 89 +e r+ EMT01310 187 AETRA 191 98775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.45E-13 | 72 | 160 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.09 | 85 | 159 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.4E-9 | 87 | 163 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-14 | 89 | 162 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.29E-10 | 89 | 160 | No hit | No description |
Pfam | PF00046 | 3.9E-10 | 89 | 157 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 5.3E-6 | 130 | 139 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 134 | 157 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.3E-6 | 139 | 155 | IPR000047 | Helix-turn-helix motif |
SMART | SM00340 | 5.9E-11 | 159 | 203 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 4.9E-7 | 159 | 190 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MSSLTTISSA SKESLEVEEL VDTRLSLVIG TGSQPPPVQA PLLRPEARER GEKRIGSSAR 60 QHGKRARAVH SGSDVDDDDN GGDAAGRARK KLRLTAEQAA LLEKSFRAHN VLSHVRPCLL 120 LNLSLKCKVE KRDLAGQLGL KPRQVEVWFQ NRRARTKLKQ TELDCELLRR WCERLSDDNA 180 RLRSELAETR AVLLVGGSHD SRLMGCPSCN RLAGGRRAA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 86 | 92 | RARKKLR |
2 | 151 | 159 | RRARTKLKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020189367.1 | 1e-125 | putative homeobox-leucine zipper protein HOX26 | ||||
TrEMBL | N1QSN6 | 1e-154 | N1QSN6_AEGTA; Putative homeobox-leucine zipper protein HOX26 | ||||
STRING | EMT01310 | 1e-155 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8315 | 32 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22800.1 | 8e-33 | HD-ZIP family protein |