PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dusal.0125s00003.1.p
Organism
Dunaliella salina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella
Family C3H
Protein Properties Length: 530aa    MW: 55042.7 Da    PI: 6.6296
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dusal.0125s00003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH41.71.9e-13153179127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                           yktelC+ +++tGtC+yG +C+FaHg+
  Dusal.0125s00003.1.p 153 YKTELCQGWLETGTCRYGTKCQFAHGR 179
                           9************************96 PP
2zf-CCCH39.96.9e-13191217127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                           yktelCr +a +G+C yG+rC+F+H++
  Dusal.0125s00003.1.p 191 YKTELCRSYASSGFCAYGSRCRFIHSR 217
                           9************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.13E-10149184IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-18150185IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-8152179IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.469152180IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-10153179IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.7E-15186217IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-9187217IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-8190217IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.896190218IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-10191217IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MPSNQGDPRL SPSSSVSSLP RSSVSSLPRS SISSFPSDFS NLTLSNSSSS NNYGSRPAGS  60
LAEMLPEASN QDLLTLCECL GLLGLGGACR EAGQSTDNYG GSFDAARMLG TAGGLGSSPV  120
TSPAFMSGPS AACSNSSSKP PRCPLPARVH TLYKTELCQG WLETGTCRYG TKCQFAHGRE  180
ELRAVPRHPK YKTELCRSYA SSGFCAYGSR CRFIHSRPNA LPSPSFPGID WTSVLSSSAS  240
SPGRLNFLGD SPAQSPLSNA YSASVDQEAV SRLLGIAGWP VHPLGNSAAA ASAESARTLG  300
LQGTPPANRA PGTATATPRN SNDSSSSSEV PSPTSGIAAS ILSQVRAMAA SSQPPHASAG  360
PSPEGAAPDP WHSPFPIPAA VSSPFQSPLH AIASCLPPTT GALSEMLPNH FPGFNATTDN  420
NVQGPMATFD QRTGLQALLS ALQSTVSPPP PPPPPPQQQQ QQQQQQQQEQ QQEQQEQEPT  480
NRSVHAHGIW STNFTTESPL MNASNSSGSL CHESFDSSLC RDSLGGPVE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A3e-26151216267Butyrate response factor 2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP36231314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.14e-22C3H family protein