PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dusal.0007s00046.1.p
Organism
Dunaliella salina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella
Family CO-like
Protein Properties Length: 450aa    MW: 47985 Da    PI: 6.0751
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dusal.0007s00046.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.63.9e-06333536
              zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg 36
                           C  +    ++ +C++++ +lC  C +++H  
  Dusal.0007s00046.1.p  3 SCLVCAAP-ASVYCQQDNAFLCTGCDVSIHTA 33
                          69999966.*********************54 PP
2zf-B_box22.32.8e-074385341
              zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg....Htvvp 41
                           ++C++++++ ++ +C+++  +lC  C  e H++    H +++
  Dusal.0007s00046.1.p 43 LPCCALCHRQVASVWCKEDAAHLCSVCDGEVHSSnpipHARES 85
                          689*****************************77888887665 PP
3CCT64.43.4e-22372415144
                   CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                           Re+++ RY+eKrk+RkFeK+irY+sRKa+Ae RpR+KGrF++++
  Dusal.0007s00046.1.p 372 REQRVARYREKRKSRKFEKTIRYASRKAYAEVRPRIKGRFATRE 415
                           9****************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.1E-5145IPR000315B-box-type zinc finger
CDDcd000211.82E-4444No hitNo description
PROSITE profilePS501198.9584189IPR000315B-box-type zinc finger
CDDcd000210.001114675No hitNo description
SMARTSM003360.664686IPR000315B-box-type zinc finger
PROSITE profilePS5101716.003372414IPR010402CCT domain
PfamPF062039.1E-17372414IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009909Biological Processregulation of flower development
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MASCLVCAAP ASVYCQQDNA FLCTGCDVSI HTANALSKMH IRLPCCALCH RQVASVWCKE  60
DAAHLCSVCD GEVHSSNPIP HARESVKPIS SPHVTASACP TPCAMSGAQG AAPAVPQMED  120
SNSACGFHAA HSPPPACELG VQGKEGSCEV RSVAVVPEMP APLEEADTGA TAGAGEVFLP  180
KAPSLPKGFD FLDLDNSWLD RLDTGFDFSD IFNAAPDAPP TDGLVPTLSD NRNGNSPQED  240
LLNSNGNAAA VHSAHEEHDL LVPSFSLSLP DELPLPQLGG GAPKRPAEDA TDALLPASKQ  300
QRPSSYSMSA QQSAPFQLKQ ESQVPAPMMA APQWQAAPAP ALAPPPPPHR QPVHTTTTHH  360
APGYGAGAEL TREQRVARYR EKRKSRKFEK TIRYASRKAY AEVRPRIKGR FATREEVIAL  420
RAQKEQQEQQ QQLQLQAMLD EDCVVPNFA*
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP6111112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15850.14e-20CONSTANS-like 1