PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Do028847.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 123aa MW: 13760.3 Da PI: 8.8017 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 42.7 | 1.8e-13 | 22 | 98 | 2 | 61 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.................tekerrtraetrtg 61 fYn+YAk+ GFs+r+ +s++s ++e k +fvC+kegk e++k++ +e+ + a+ + + Do028847.1 22 FYNAYAKRKGFSIRNGTSRRSAITDELDKVKFVCNKEGKGEKSKDHsneavelsgcengdttgSESDVQVAAVAKKK 98 9***************************************9999886666666666555554444444444444444 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.5E-11 | 22 | 82 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 123 aa Download sequence Send to blast |
MSSSDDPYVG KMFDTVQEAR VFYNAYAKRK GFSIRNGTSR RSAITDELDK VKFVCNKEGK 60 GEKSKDHSNE AVELSGCENG DTTGSESDVQ VAAVAKKKCT WVKGKRSREN EVYELQSKNT 120 YQV |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Do028847.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002442929.2 | 3e-16 | protein FAR1-RELATED SEQUENCE 5 | ||||
Refseq | XP_021311908.1 | 3e-16 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A1E5WKW7 | 3e-85 | A0A1E5WKW7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J00335.1.p | 3e-20 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9528 | 8 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G18960.1 | 1e-13 | FAR1-related sequence 12 |