PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do028053.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | bHLH | ||||||||
Protein Properties | Length: 370aa MW: 39153.7 Da PI: 9.374 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.7 | 9.8e-14 | 85 | 130 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RRd++N +f eLr +P+ +++Ka++L A YI++L Do028053.1 85 SHVEAERQRRDKLNRRFCELRAAVPTV-----SRMDKASVLADAAAYISEL 130 799***********************6.....4****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.466 | 81 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-16 | 84 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.31E-13 | 85 | 135 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 9.6E-17 | 85 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.7E-11 | 85 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.5E-13 | 87 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MADELAYPAS TCSSPSPASL FSTAGHHQEL DFVSSEVLEQ WLGSEDCLDG AAWGDDGLSG 60 GQPPAPAPKK RGRKPGPRTN GPPISHVEAE RQRRDKLNRR FCELRAAVPT VSRMDKASVL 120 ADAAAYISEL RDRVEQLEAE AKQAAAVAVV ALAHSSPGVL EKLEVRMVVG QEAAALRLTT 180 TAARHAPARL MLALRSLDLP VLHACVCHVV GGVTVQDAVV DVPAATLRDE RRLHHALLCR 240 LQQSGLLDAL TAALCTDATH HAAATIHSLV LFGAALYLPN RATKDALFGV VLYPPNRATP 300 VSLSAVQALF VLVITDGRNG IVEPGGAATA LGGWGGARRQ AGGRAKRGTE SGELIPVGRR 360 RRRGRRARTS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 1e-18 | 83 | 143 | 6 | 66 | Transcription factor MYC2 |
5gnj_B | 1e-18 | 83 | 143 | 6 | 66 | Transcription factor MYC2 |
5gnj_E | 1e-18 | 83 | 143 | 6 | 66 | Transcription factor MYC2 |
5gnj_F | 1e-18 | 83 | 143 | 6 | 66 | Transcription factor MYC2 |
5gnj_G | 1e-18 | 83 | 143 | 6 | 66 | Transcription factor MYC2 |
5gnj_I | 1e-18 | 83 | 143 | 6 | 66 | Transcription factor MYC2 |
5gnj_M | 1e-18 | 83 | 143 | 6 | 66 | Transcription factor MYC2 |
5gnj_N | 1e-18 | 83 | 143 | 6 | 66 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 358 | 365 | RRRRRGRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do028053.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002444645.1 | 2e-92 | transcription factor bHLH14 | ||||
TrEMBL | A0A1E5UIG1 | 0.0 | A0A1E5UIG1_9POAL; Uncharacterized protein | ||||
STRING | Sb07g025330.1 | 8e-92 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP893 | 33 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17880.1 | 3e-16 | bHLH family protein |