PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do027693.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | GRAS | ||||||||
Protein Properties | Length: 140aa MW: 16145.4 Da PI: 5.6111 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 105.3 | 8.5e-33 | 2 | 139 | 101 | 234 |
GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvp.fefnvlvakrledleleeLrv 196 +I++a+ g++++Hi+D+++ G+QW+ Ll+ L sR++g p+++iT++++p+++ +e++ee++ rL+k+A+e+g+p f+f++ +++++e++ +++L++ Do027693.1 2 TIMQAMVGKSKLHIVDYGMCFGFQWAGLLHLLXSREGGVPEVKITAIDNPKPKicPAERIEEIECRLRKYAHEFGLPsFKFHT-ITRKWEEVCIKDLNT 99 79**************************************************9***********************66*****.799************ PP GRAS 197 kpgEalaVnlvlqlhrlldesvsles..erdevLklvksl 234 + +E+l+Vn ++ +l+de + ++ +rd+vL+ +k++ Do027693.1 100 DADEVLIVNDLFNFSTLMDEGEHFDDpsPRDTVLDNIKKM 139 ******************99888777669*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 21.981 | 1 | 140 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.9E-30 | 2 | 139 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
MTIMQAMVGK SKLHIVDYGM CFGFQWAGLL HLLXSREGGV PEVKITAIDN PKPKICPAER 60 IEEIECRLRK YAHEFGLPSF KFHTITRKWE EVCIKDLNTD ADEVLIVNDL FNFSTLMDEG 120 EHFDDPSPRD TVLDNIKKMR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do027693.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008677891.1 | 2e-63 | scarecrow-like protein 34 isoform X1 | ||||
Refseq | XP_008677892.1 | 1e-63 | scarecrow-like protein 34 isoform X2 | ||||
Refseq | XP_021317850.1 | 1e-63 | scarecrow-like protein 9 | ||||
TrEMBL | A0A1E5VX53 | 1e-100 | A0A1E5VX53_9POAL; Uncharacterized protein (Fragment) | ||||
STRING | Pavir.J36189.1.p | 6e-69 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP22738 | 4 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 3e-29 | SCARECROW-like 14 |