PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do027262.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

HD-ZIP

Protein Properties

Length: 506aa MW: 54915.7 Da PI: 6.4447

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do027262.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	69.5	4e-22	100	155	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q+++Le++F+++++p+ ++r+eL+k+lgL+ rqVk+WFqNrR+++k Do027262.1 100 KKRYHRHTPHQIQQLEAVFKECPHPDDKRRAELSKRLGLEPRQVKFWFQNRRTQMK 155 678899***********************************************998 PP
2	START	116.8	3e-37	156	268	94	206
EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS START 94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191 m+aelq+lsplvp R+++f+R++ ql +++w++vdvSvd + + + +++lpSg+++++++ng +kvtwveh+++ ++++h+l+r+l++sgla+ Do027262.1 156 MQAELQVLSPLVPrREVTFLRFCNQLAEDVWAVVDVSVDGLERDQCLVTNMNCRRLPSGCVVQDTPNG-CKVTWVEHTEYYEASVHQLYRPLLRSGLAF 253 89***********************************98887778889999***********.************************** PP HHHHHHHHTXXXXXX CS START 192 gaktwvatlqrqcek 206 ga +w+atlqrqce+ Do027262.1 254 GAGRWLATLQRQCEC 268 ***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00234	2.8E-7	58	268	IPR002913	START domain
Gene3D	G3DSA:1.10.10.60	3.1E-24	85	157	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.54E-21	87	156	IPR009057	Homeodomain-like
PROSITE profile	PS50071	18.285	97	157	IPR001356	Homeobox domain
SMART	SM00389	2.9E-20	98	161	IPR001356	Homeobox domain
CDD	cd00086	2.75E-21	99	155	No hit	No description
Pfam	PF00046	1.2E-19	100	155	IPR001356	Homeobox domain
PRINTS	PR00031	3.5E-5	128	137	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	132	155	IPR017970	Homeobox, conserved site
PRINTS	PR00031	3.5E-5	137	153	IPR000047	Helix-turn-helix motif
SuperFamily	SSF55961	4.67E-17	152	268	No hit	No description
Pfam	PF01852	1.3E-31	156	268	IPR002913	START domain
PROSITE profile	PS50848	24.53	162	271	IPR002913	START domain
SuperFamily	SSF55961	1.28E-17	289	469	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 506 aa Download sequence Send to blast
MSFGDLLGGA GDAPGLHYPT YGGVFASSPA LSLAVADAGH RPDGSGERAG SVARGGGGSA 60 KDEPEDESRS AMSGGHLDVV LAGGSEDDED GEAGNPRKRK KRYHRHTPHQ IQQLEAVFKE 120 CPHPDDKRRA ELSKRLGLEP RQVKFWFQNR RTQMKMQAEL QVLSPLVPRR EVTFLRFCNQ 180 LAEDVWAVVD VSVDGLERDQ CLVTNMNCRR LPSGCVVQDT PNGCKVTWVE HTEYYEASVH 240 QLYRPLLRSG LAFGAGRWLA TLQRQCECLA ILMSSVAVPE HDSAVVPLEG KRSLLKLAER 300 MMENFCAGVS ASSAEWSKLD GLTGSMQKDV RVMVRKSVDE PGVPPGVVLS AATAVWMPVA 360 PERLFNFLRN EGLRAEWDIL SNGGPMQQMP TNTHLNSILI LQETCTDKSG AMVVYAPVDF 420 PAMQLVMGGG DSTYVALLPS GFAILPCGPS TCGVGHKTSG SLLTVAFQIL VNTQPTAKLT 480 TESVDTVYNL ISCTIEKIKV ALHCEV

Sequence ? help Back to Top

Protein Sequence Length: 506 aa Download sequence Send to blast

MSFGDLLGGA GDAPGLHYPT YGGVFASSPA LSLAVADAGH RPDGSGERAG SVARGGGGSA  60
KDEPEDESRS AMSGGHLDVV LAGGSEDDED GEAGNPRKRK KRYHRHTPHQ IQQLEAVFKE  120
CPHPDDKRRA ELSKRLGLEP RQVKFWFQNR RTQMKMQAEL QVLSPLVPRR EVTFLRFCNQ  180
LAEDVWAVVD VSVDGLERDQ CLVTNMNCRR LPSGCVVQDT PNGCKVTWVE HTEYYEASVH  240
QLYRPLLRSG LAFGAGRWLA TLQRQCECLA ILMSSVAVPE HDSAVVPLEG KRSLLKLAER  300
MMENFCAGVS ASSAEWSKLD GLTGSMQKDV RVMVRKSVDE PGVPPGVVLS AATAVWMPVA  360
PERLFNFLRN EGLRAEWDIL SNGGPMQQMP TNTHLNSILI LQETCTDKSG AMVVYAPVDF  420
PAMQLVMGGG DSTYVALLPS GFAILPCGPS TCGVGHKTSG SLLTVAFQIL VNTQPTAKLT  480
TESVDTVYNL ISCTIEKIKV ALHCEV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	95	101	PRKRKKR
2	96	100	RKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do027262.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823430.1	0.0	homeobox-leucine zipper protein ROC4-like
Swissprot	Q6EPF0	0.0	ROC5_ORYSJ; Homeobox-leucine zipper protein ROC5
TrEMBL	A0A1E5VSV4	0.0	A0A1E5VSV4_9POAL; Homeobox-leucine zipper protein ROC5
STRING	Pavir.Ga00993.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP21042	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61150.1	1e-151	homeodomain GLABROUS 1

Publications ? help Back to Top
Zou LP, et al. Leaf rolling controlled by the homeodomain leucine zipper class IV gene Roc5 in rice. Plant Physiol., 2011. 156(3): p. 1589-602 [PMID:21596949] Chou IT,Gasser CS Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins. Plant Mol. Biol., 1997. 35(6): p. 873-92 [PMID:9426607]