PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do025951.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

AP2

Protein Properties

Length: 367aa MW: 39707.9 Da PI: 7.2085

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do025951.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	40.3	7.6e-13	52	108	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d s+n ++k+ g ++ +e Aa+a++ a++k++g Do025951.1 52 SIYRGVTRHRWTGRFEAHLWDkNSWNEsQNKKGKQGAYDDEEAAARAYDLAALKYWG 108 57*****************8888888775555599****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	2.29E-15	52	118	IPR016177	DNA-binding domain
Pfam	PF00847	4.6E-9	52	108	IPR001471	AP2/ERF domain
SMART	SM00380	2.3E-20	53	122	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	18.913	53	116	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.6E-13	53	117	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.2E-6	54	65	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	8.729	126	182	IPR001471	AP2/ERF domain
SMART	SM00380	0.0038	144	188	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.8E-6	156	183	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.22E-5	157	184	IPR016177	DNA-binding domain
PRINTS	PR00367	4.2E-6	164	184	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MAKPRKNSTA AANSSNNNAT SAAAAAGDVG VRVKPKRTRK SVPRESPSQR SSIYRGVTRH 60 RWTGRFEAHL WDKNSWNESQ NKKGKQGAYD DEEAAARAYD LAALKYWGPE TILNFPASVY 120 EDELKEMEGQ SREEYIGSLR RSMKFIHRKS SGFSRATQEE AAMAYDMAAI EYRGLNAVTN 180 FDLSRYLKWL RPGADGVAAA AQNPHPMLGA LAQHHQLLPP PADDATIDAA AFHHDHHQRQ 240 GLPPRTSLGH TPTTSALSLL LQSPKFKEMI ERTSAAESGG GGDTTTTSSS SPTPSPSPPR 300 ASPSPSPPTQ QQHQAGGAAS PQCSFPEDIQ TFFGCEDAGA VGVDVDALFF GDLAAYASPA 360 FHFELDL

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MAKPRKNSTA AANSSNNNAT SAAAAAGDVG VRVKPKRTRK SVPRESPSQR SSIYRGVTRH  60
RWTGRFEAHL WDKNSWNESQ NKKGKQGAYD DEEAAARAYD LAALKYWGPE TILNFPASVY  120
EDELKEMEGQ SREEYIGSLR RSMKFIHRKS SGFSRATQEE AAMAYDMAAI EYRGLNAVTN  180
FDLSRYLKWL RPGADGVAAA AQNPHPMLGA LAQHHQLLPP PADDATIDAA AFHHDHHQRQ  240
GLPPRTSLGH TPTTSALSLL LQSPKFKEMI ERTSAAESGG GGDTTTTSSS SPTPSPSPPR  300
ASPSPSPPTQ QQHQAGGAAS PQCSFPEDIQ TFFGCEDAGA VGVDVDALFF GDLAAYASPA  360
FHFELDL

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do025951.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT039632	1e-126	BT039632.1 Zea mays full-length cDNA clone ZM_BFc0035F11 mRNA, complete cds.
GenBank	BT055111	1e-126	BT055111.1 Zea mays full-length cDNA clone ZM_BFc0006C10 mRNA, complete cds.
GenBank	KJ727588	1e-126	KJ727588.1 Zea mays clone pUT5448 AP2-EREBP transcription factor (EREB143) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025799408.1	1e-165	AP2-like ethylene-responsive transcription factor At1g16060 isoform X1
Swissprot	Q94AN4	3e-56	AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBL	A0A1E5UPC9	0.0	A0A1E5UPC9_9POAL; AP2-like ethylene-responsive transcription factor
STRING	Pavir.Bb02213.1.p	1e-159	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3319	36	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16060.1	4e-53	ARIA-interacting double AP2 domain protein

Publications ? help Back to Top
Todd J,Post-Beittenmiller D,Jaworski JG KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana. Plant J., 1999. 17(2): p. 119-30 [PMID:10074711] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]