PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do024887.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 271aa    MW: 29746.8 Da    PI: 7.6726
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do024887.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.3e-13110155454
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  h e+Er+RR+++N +f eLr  +P+       +++K++ L  A +YI +L
  Do024887.1 110 CHVEIERQRREKMNRRFCELRAAVPNV-----SRMDKSSLLGDAADYITKL 155
                 699***********************6.....49**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-16105168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.567106155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-10110155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-16110169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.92E-12111160No hitNo description
SMARTSM003532.1E-12112161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MDQELSHQSS FSPLESWSFF PETSSSSLVL DLMSTEGPEQ WFSSNIEEAK TEYVTPQLHT  60
PTPKESTLCA ADSEPSKFHP TMMADAAEVE GPVKRRGRKP GLRPTRQASC HVEIERQRRE  120
KMNRRFCELR AAVPNVSRMD KSSLLGDAAD YITKLRARVE QLEAELRKVA MVKLGASAAG  180
PKPDEAVEVR VVGTDIAVLR VRSPAKHAPA SLMAALRSLD LQVRHASVSR VHGMTTQDAV  240
VDVPPSSGIA LLGDNGLRTA ILQKMQDSTP H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-17111165963Transcription factor MYC2
5gnj_B2e-17111165963Transcription factor MYC2
5gnj_E2e-17111165963Transcription factor MYC2
5gnj_F2e-17111165963Transcription factor MYC2
5gnj_G2e-17111165963Transcription factor MYC2
5gnj_I2e-17111165963Transcription factor MYC2
5gnj_M2e-17111165963Transcription factor MYC2
5gnj_N2e-17111165963Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105118RQASCHVEIERQRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo024887.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801647.12e-61transcription factor MYC2-like
TrEMBLA0A1E5VKA70.0A0A1E5VKA7_9POAL; Transcription factor MYC3
STRINGPavir.J01049.1.p5e-61(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46760.14e-33bHLH family protein